miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 163234 0.66 0.920173
Target:  5'- gCGGCGcCUCaGCCuccuCGCAGUCCGCGu-- -3'
miRNA:   3'- -GCUGU-GAG-CGGc---GCGUUAGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 163178 0.68 0.800409
Target:  5'- -cGCGCUCGCUG-GUGG-CCGUGGUCu -3'
miRNA:   3'- gcUGUGAGCGGCgCGUUaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 162576 0.71 0.68085
Target:  5'- cCGACuACcUGCUGCGCcGUCUGCGGcUCu -3'
miRNA:   3'- -GCUG-UGaGCGGCGCGuUAGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 162257 0.74 0.507881
Target:  5'- cCGGCGCaguUUGCgGCGCAgacGUCgGCGGUCc -3'
miRNA:   3'- -GCUGUG---AGCGgCGCGU---UAGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 155484 0.66 0.920173
Target:  5'- aGAUG-UCGCCGCccuuGCAAUCUGCGccGUCc -3'
miRNA:   3'- gCUGUgAGCGGCG----CGUUAGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 153784 0.67 0.870651
Target:  5'- uCGGC-CUcCGCCGCGg---CCGCGGcCg -3'
miRNA:   3'- -GCUGuGA-GCGGCGCguuaGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 152455 0.68 0.841127
Target:  5'- gGAUguGCUUGCCGCGCAG-CUGCGc-- -3'
miRNA:   3'- gCUG--UGAGCGGCGCGUUaGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 152148 0.66 0.914721
Target:  5'- uCGACGCUguccucgaUGCCgauGCGCGAUuuGCuGUCc -3'
miRNA:   3'- -GCUGUGA--------GCGG---CGCGUUAggCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 151329 0.67 0.884269
Target:  5'- uGGCACUcCGCC-CGCcgcUUCGCGGcUCa -3'
miRNA:   3'- gCUGUGA-GCGGcGCGuu-AGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 149511 0.72 0.593382
Target:  5'- uGGCGCUUGuuGCGCGggCUGCGucGUCa -3'
miRNA:   3'- gCUGUGAGCggCGCGUuaGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 148852 0.66 0.909053
Target:  5'- uGGCugUUGCCGcCGCug-CCGCGuGa- -3'
miRNA:   3'- gCUGugAGCGGC-GCGuuaGGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 148822 0.67 0.884269
Target:  5'- gCGGCugcaggGCUUGCUGUGCAAcCauauaGCGGUCc -3'
miRNA:   3'- -GCUG------UGAGCGGCGCGUUaGg----CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 144478 0.68 0.841127
Target:  5'- cCGGCGuCUCGCCGgGC-AUCCaguuCGGUa -3'
miRNA:   3'- -GCUGU-GAGCGGCgCGuUAGGc---GCCAg -5'
30232 3' -58.3 NC_006273.1 + 142818 0.69 0.774267
Target:  5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3'
miRNA:   3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 141765 0.67 0.867832
Target:  5'- gGAUGCgcgaaGCUGCGCAGgccgccgcucaagCCGCGGUa -3'
miRNA:   3'- gCUGUGag---CGGCGCGUUa------------GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 140896 0.66 0.890777
Target:  5'- cCGGC-CUCGUCGCGCAccuguuuguuGUgCGCGcUCu -3'
miRNA:   3'- -GCUGuGAGCGGCGCGU----------UAgGCGCcAG- -5'
30232 3' -58.3 NC_006273.1 + 138689 0.69 0.74709
Target:  5'- uGGCAaaaagCGCCGUGCucuuggcgCCGCGGUg -3'
miRNA:   3'- gCUGUga---GCGGCGCGuua-----GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 136698 0.67 0.870651
Target:  5'- cCGGcCGgUCGCCGC-Cg--CCGCGGUUg -3'
miRNA:   3'- -GCU-GUgAGCGGCGcGuuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 135677 0.66 0.903172
Target:  5'- gGACAC-CGUCGUcuaCAAgacgaCCGCGGUCc -3'
miRNA:   3'- gCUGUGaGCGGCGc--GUUa----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 133179 0.69 0.765313
Target:  5'- -cGCGCUCGCuuaacgugaCGCGUuaucgacgCCGCGGUCu -3'
miRNA:   3'- gcUGUGAGCG---------GCGCGuua-----GGCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.