miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 129537 0.69 0.774267
Target:  5'- cCGGCGCUgCGCCGCGCcg-CCuCGGc- -3'
miRNA:   3'- -GCUGUGA-GCGGCGCGuuaGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 129244 0.68 0.825311
Target:  5'- gCGuGCGC-CGCCGCGgcCAAgCCGCuGGUCa -3'
miRNA:   3'- -GC-UGUGaGCGGCGC--GUUaGGCG-CCAG- -5'
30232 3' -58.3 NC_006273.1 + 126066 0.67 0.856256
Target:  5'- -uACGC-CgGCCGCGUgccgGAUCCaGCGGUCc -3'
miRNA:   3'- gcUGUGaG-CGGCGCG----UUAGG-CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 125314 0.76 0.379099
Target:  5'- gGugACUCGCCGC-UAAcCUGCGGUCg -3'
miRNA:   3'- gCugUGAGCGGCGcGUUaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 124424 0.71 0.68085
Target:  5'- gCGACACgugcugCgGCCGCGCGggcGUgCGCGGcUCg -3'
miRNA:   3'- -GCUGUGa-----G-CGGCGCGU---UAgGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 124397 0.69 0.791823
Target:  5'- cCGACA---GCCGCGCGAUCuCGUcGUCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUUAG-GCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 124054 0.67 0.884269
Target:  5'- gCGGCGCg-GCCGCGCua--UGCGGcCa -3'
miRNA:   3'- -GCUGUGagCGGCGCGuuagGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 120933 0.73 0.564452
Target:  5'- aGGCGCUCGCCaugGCGCcg-CCGcCGGUg -3'
miRNA:   3'- gCUGUGAGCGG---CGCGuuaGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 119140 0.69 0.783107
Target:  5'- gGAgACggCGCCGCGCAugacguugcUCCGUGGa- -3'
miRNA:   3'- gCUgUGa-GCGGCGCGUu--------AGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 116667 0.66 0.914721
Target:  5'- aGAUugUaCGCCGCGCuucggaaaAGUCCGagcuGGUUu -3'
miRNA:   3'- gCUGugA-GCGGCGCG--------UUAGGCg---CCAG- -5'
30232 3' -58.3 NC_006273.1 + 114554 0.67 0.881609
Target:  5'- aGACGCgcgaaaacgccggCGUgGCGCucuaCGCGGUCg -3'
miRNA:   3'- gCUGUGa------------GCGgCGCGuuagGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 113617 0.67 0.884269
Target:  5'- cCGugGuaCG-CGCGCGAccCCGCGGUCa -3'
miRNA:   3'- -GCugUgaGCgGCGCGUUa-GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 113170 0.66 0.903172
Target:  5'- -uACACcCGUaCGCGCAggcagcauggaGUCgCGCGGUCg -3'
miRNA:   3'- gcUGUGaGCG-GCGCGU-----------UAG-GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 112552 0.71 0.65176
Target:  5'- uGACGCggUCGCCGCGuCAGcggCCGcCGGUg -3'
miRNA:   3'- gCUGUG--AGCGGCGC-GUUa--GGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 110946 0.68 0.841127
Target:  5'- uCGGCGa--GCCGCGCAcgCCcgcGCGGcCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUuaGG---CGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 108568 0.66 0.920173
Target:  5'- -aACugUUuuugGCCGUGCAAUUCGUGGg- -3'
miRNA:   3'- gcUGugAG----CGGCGCGUUAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 105850 0.67 0.884269
Target:  5'- cCGAgGCggCGCgGCGCAGcgccggccauucUCCG-GGUCg -3'
miRNA:   3'- -GCUgUGa-GCGgCGCGUU------------AGGCgCCAG- -5'
30232 3' -58.3 NC_006273.1 + 104632 0.66 0.90197
Target:  5'- gCGACGucCUCGgaGCGCAAgaaacaccguaaCCGCGGUUu -3'
miRNA:   3'- -GCUGU--GAGCggCGCGUUa-----------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 103006 0.66 0.914721
Target:  5'- aGACGC-CGUCGCGCAG-CCGUaaaucaaaGUCg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUaGGCGc-------CAG- -5'
30232 3' -58.3 NC_006273.1 + 101750 0.66 0.909053
Target:  5'- aCGGCGgUCGCCggcggcauggGCGCG-UCgGgCGGUCu -3'
miRNA:   3'- -GCUGUgAGCGG----------CGCGUuAGgC-GCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.