miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 98613 0.69 0.756251
Target:  5'- --cCACUCGUccguaCGCGCGAccucgUCGCGGUCg -3'
miRNA:   3'- gcuGUGAGCG-----GCGCGUUa----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 96061 0.7 0.713411
Target:  5'- gGGCACcgccucgguacccccUgGCCGagGCgAGUCCGCGGUCg -3'
miRNA:   3'- gCUGUG---------------AgCGGCg-CG-UUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 94211 0.72 0.612806
Target:  5'- cCGGCguGCcCGCCgccccccgGCGCAGUCCGCGG-Ca -3'
miRNA:   3'- -GCUG--UGaGCGG--------CGCGUUAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 91224 0.66 0.897079
Target:  5'- uCGGCGauCUCGgCGCGCGAggcuUCgGCGG-Cg -3'
miRNA:   3'- -GCUGU--GAGCgGCGCGUU----AGgCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 90935 0.77 0.374417
Target:  5'- aCGGCACgcgcaccgccucgcCGCCGUGCAGUcgcaCCGUGGUCg -3'
miRNA:   3'- -GCUGUGa-------------GCGGCGCGUUA----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 88588 0.68 0.841127
Target:  5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3'
miRNA:   3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 87506 0.69 0.774267
Target:  5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3'
miRNA:   3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 78696 0.66 0.920173
Target:  5'- gGGCAC-CGCCGCcgGAggCGCGGUUc -3'
miRNA:   3'- gCUGUGaGCGGCGcgUUagGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 77328 0.66 0.903172
Target:  5'- uCGACAuCUCGCCGUacgGCAAcgaGCaGGUCu -3'
miRNA:   3'- -GCUGU-GAGCGGCG---CGUUaggCG-CCAG- -5'
30232 3' -58.3 NC_006273.1 + 72288 0.69 0.756251
Target:  5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3'
miRNA:   3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 70653 0.67 0.877559
Target:  5'- aCGACACggugcUGCUGCGCGAcacgguggCgGCGGUg -3'
miRNA:   3'- -GCUGUGa----GCGGCGCGUUa-------GgCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 70101 0.7 0.719091
Target:  5'- gGACACagCGCCGCGCuggaugacgguGAUgCGCGGc- -3'
miRNA:   3'- gCUGUGa-GCGGCGCG-----------UUAgGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 68814 0.68 0.808857
Target:  5'- gGACGCguaGCCG-GCGGcgCCGCGcGUCa -3'
miRNA:   3'- gCUGUGag-CGGCgCGUUa-GGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 68746 0.67 0.870651
Target:  5'- aCGGCGCguccaCGCCGCGgGucgacaugGUCCaggcgguggaaGCGGUCu -3'
miRNA:   3'- -GCUGUGa----GCGGCGCgU--------UAGG-----------CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 68187 0.66 0.890777
Target:  5'- uGACGCUguuuaCGCCG-GCc-UCCGCGGcCg -3'
miRNA:   3'- gCUGUGA-----GCGGCgCGuuAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 68138 0.71 0.68085
Target:  5'- aGAuCGCUCGCUGCGCcagGAUCC-CGGg- -3'
miRNA:   3'- gCU-GUGAGCGGCGCG---UUAGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 66756 0.66 0.909053
Target:  5'- aGACGCUgGugcgcgacCCGgGCAG-CCGCGGcUCg -3'
miRNA:   3'- gCUGUGAgC--------GGCgCGUUaGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 64981 0.71 0.66148
Target:  5'- cCGucaACUCGuuGgCGCGcgCCGUGGUCu -3'
miRNA:   3'- -GCug-UGAGCggC-GCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 64808 0.67 0.856256
Target:  5'- gCGACGaagUGCCGCGCcgccuggagUCGCGGUUc -3'
miRNA:   3'- -GCUGUga-GCGGCGCGuua------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 58471 0.66 0.914721
Target:  5'- uCGACGCUaG-CGCGCA--CCGCGG-Ca -3'
miRNA:   3'- -GCUGUGAgCgGCGCGUuaGGCGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.