Results 21 - 40 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 87506 | 0.69 | 0.774267 |
Target: 5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3' miRNA: 3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 142818 | 0.69 | 0.774267 |
Target: 5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3' miRNA: 3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 195295 | 0.72 | 0.622542 |
Target: 5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3' miRNA: 3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 94211 | 0.72 | 0.612806 |
Target: 5'- cCGGCguGCcCGCCgccccccgGCGCAGUCCGCGG-Ca -3' miRNA: 3'- -GCUG--UGaGCGG--------CGCGUUAGGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 149511 | 0.72 | 0.593382 |
Target: 5'- uGGCGCUUGuuGCGCGggCUGCGucGUCa -3' miRNA: 3'- gCUGUGAGCggCGCGUuaGGCGC--CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 218402 | 0.73 | 0.564452 |
Target: 5'- gCGAaACU-GCCGCGCGuagUCGCGGUCu -3' miRNA: 3'- -GCUgUGAgCGGCGCGUua-GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 120933 | 0.73 | 0.564452 |
Target: 5'- aGGCGCUCGCCaugGCGCcg-CCGcCGGUg -3' miRNA: 3'- gCUGUGAGCGG---CGCGuuaGGC-GCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 195793 | 0.73 | 0.535906 |
Target: 5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3' miRNA: 3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 125314 | 0.76 | 0.379099 |
Target: 5'- gGugACUCGCCGC-UAAcCUGCGGUCg -3' miRNA: 3'- gCugUGAGCGGCGcGUUaGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 90935 | 0.77 | 0.374417 |
Target: 5'- aCGGCACgcgcaccgccucgcCGCCGUGCAGUcgcaCCGUGGUCg -3' miRNA: 3'- -GCUGUGa-------------GCGGCGCGUUA----GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 31242 | 0.71 | 0.65176 |
Target: 5'- gCGACACgguaCGCCGgGUAG-CCGCgcaGGUCa -3' miRNA: 3'- -GCUGUGa---GCGGCgCGUUaGGCG---CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 112552 | 0.71 | 0.65176 |
Target: 5'- uGACGCggUCGCCGCGuCAGcggCCGcCGGUg -3' miRNA: 3'- gCUGUG--AGCGGCGC-GUUa--GGC-GCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 72288 | 0.69 | 0.756251 |
Target: 5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3' miRNA: 3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 138689 | 0.69 | 0.74709 |
Target: 5'- uGGCAaaaagCGCCGUGCucuuggcgCCGCGGUg -3' miRNA: 3'- gCUGUga---GCGGCGCGuua-----GGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 21947 | 0.7 | 0.719091 |
Target: 5'- aCGGCGCUaGCgGCGCuaucAUCUGCGGa- -3' miRNA: 3'- -GCUGUGAgCGgCGCGu---UAGGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 96061 | 0.7 | 0.713411 |
Target: 5'- gGGCACcgccucgguacccccUgGCCGagGCgAGUCCGCGGUCg -3' miRNA: 3'- gCUGUG---------------AgCGGCg-CG-UUAGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 192753 | 0.71 | 0.68085 |
Target: 5'- uGGCAgaCGCgGUgGCAGUuuGCGGUCu -3' miRNA: 3'- gCUGUgaGCGgCG-CGUUAggCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 124424 | 0.71 | 0.68085 |
Target: 5'- gCGACACgugcugCgGCCGCGCGggcGUgCGCGGcUCg -3' miRNA: 3'- -GCUGUGa-----G-CGGCGCGU---UAgGCGCC-AG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 68138 | 0.71 | 0.68085 |
Target: 5'- aGAuCGCUCGCUGCGCcagGAUCC-CGGg- -3' miRNA: 3'- gCU-GUGAGCGGCGCG---UUAGGcGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 64981 | 0.71 | 0.66148 |
Target: 5'- cCGucaACUCGuuGgCGCGcgCCGUGGUCu -3' miRNA: 3'- -GCug-UGAGCggC-GCGUuaGGCGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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