Results 41 - 60 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 218402 | 0.73 | 0.564452 |
Target: 5'- gCGAaACU-GCCGCGCGuagUCGCGGUCu -3' miRNA: 3'- -GCUgUGAgCGGCGCGUua-GGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 120933 | 0.73 | 0.564452 |
Target: 5'- aGGCGCUCGCCaugGCGCcg-CCGcCGGUg -3' miRNA: 3'- gCUGUGAGCGG---CGCGuuaGGC-GCCAg -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 195793 | 0.73 | 0.535906 |
Target: 5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3' miRNA: 3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 125314 | 0.76 | 0.379099 |
Target: 5'- gGugACUCGCCGC-UAAcCUGCGGUCg -3' miRNA: 3'- gCugUGAGCGGCGcGUUaGGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 90935 | 0.77 | 0.374417 |
Target: 5'- aCGGCACgcgcaccgccucgcCGCCGUGCAGUcgcaCCGUGGUCg -3' miRNA: 3'- -GCUGUGa-------------GCGGCGCGUUA----GGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 192753 | 0.71 | 0.68085 |
Target: 5'- uGGCAgaCGCgGUgGCAGUuuGCGGUCu -3' miRNA: 3'- gCUGUgaGCGgCG-CGUUAggCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 96061 | 0.7 | 0.713411 |
Target: 5'- gGGCACcgccucgguacccccUgGCCGagGCgAGUCCGCGGUCg -3' miRNA: 3'- gCUGUG---------------AgCGGCg-CG-UUAGGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 22005 | 0.68 | 0.841127 |
Target: 5'- gGGCuGCUgGCCGCGgGAUCgGUGGcCc -3' miRNA: 3'- gCUG-UGAgCGGCGCgUUAGgCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 129244 | 0.68 | 0.825311 |
Target: 5'- gCGuGCGC-CGCCGCGgcCAAgCCGCuGGUCa -3' miRNA: 3'- -GC-UGUGaGCGGCGC--GUUaGGCG-CCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 56703 | 0.68 | 0.825311 |
Target: 5'- gGAacCAC-CGCCGC-CA--CCGCGGUCg -3' miRNA: 3'- gCU--GUGaGCGGCGcGUuaGGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 68814 | 0.68 | 0.808857 |
Target: 5'- gGACGCguaGCCG-GCGGcgCCGCGcGUCa -3' miRNA: 3'- gCUGUGag-CGGCgCGUUa-GGCGC-CAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 124397 | 0.69 | 0.791823 |
Target: 5'- cCGACA---GCCGCGCGAUCuCGUcGUCg -3' miRNA: 3'- -GCUGUgagCGGCGCGUUAG-GCGcCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 41614 | 0.69 | 0.791823 |
Target: 5'- uGGCGCUCGUCuCGguAUCCGUGauGUCc -3' miRNA: 3'- gCUGUGAGCGGcGCguUAGGCGC--CAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 119140 | 0.69 | 0.783107 |
Target: 5'- gGAgACggCGCCGCGCAugacguugcUCCGUGGa- -3' miRNA: 3'- gCUgUGa-GCGGCGCGUu--------AGGCGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 129537 | 0.69 | 0.774267 |
Target: 5'- cCGGCGCUgCGCCGCGCcg-CCuCGGc- -3' miRNA: 3'- -GCUGUGA-GCGGCGCGuuaGGcGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 87506 | 0.69 | 0.774267 |
Target: 5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3' miRNA: 3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 142818 | 0.69 | 0.774267 |
Target: 5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3' miRNA: 3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 72288 | 0.69 | 0.756251 |
Target: 5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3' miRNA: 3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 138689 | 0.69 | 0.74709 |
Target: 5'- uGGCAaaaagCGCCGUGCucuuggcgCCGCGGUg -3' miRNA: 3'- gCUGUga---GCGGCGCGuua-----GGCGCCAg -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 21947 | 0.7 | 0.719091 |
Target: 5'- aCGGCGCUaGCgGCGCuaucAUCUGCGGa- -3' miRNA: 3'- -GCUGUGAgCGgCGCGu---UAGGCGCCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home