Results 61 - 80 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 124397 | 0.69 | 0.791823 |
Target: 5'- cCGACA---GCCGCGCGAUCuCGUcGUCg -3' miRNA: 3'- -GCUGUgagCGGCGCGUUAG-GCGcCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 72288 | 0.69 | 0.756251 |
Target: 5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3' miRNA: 3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 142818 | 0.69 | 0.774267 |
Target: 5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3' miRNA: 3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 87506 | 0.69 | 0.774267 |
Target: 5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3' miRNA: 3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 129537 | 0.69 | 0.774267 |
Target: 5'- cCGGCGCUgCGCCGCGCcg-CCuCGGc- -3' miRNA: 3'- -GCUGUGA-GCGGCGCGuuaGGcGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 119140 | 0.69 | 0.783107 |
Target: 5'- gGAgACggCGCCGCGCAugacguugcUCCGUGGa- -3' miRNA: 3'- gCUgUGa-GCGGCGCGUu--------AGGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 41614 | 0.69 | 0.791823 |
Target: 5'- uGGCGCUCGUCuCGguAUCCGUGauGUCc -3' miRNA: 3'- gCUGUGAGCGGcGCguUAGGCGC--CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 26117 | 0.7 | 0.737838 |
Target: 5'- gGAUACgcCGCCGgGCg--CUGCGGUCc -3' miRNA: 3'- gCUGUGa-GCGGCgCGuuaGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 214025 | 0.7 | 0.728502 |
Target: 5'- aGACGgUCGCCGUaaggcaGCAA-CUGCGGUg -3' miRNA: 3'- gCUGUgAGCGGCG------CGUUaGGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 17390 | 0.7 | 0.719091 |
Target: 5'- aGACGCggUUGCCGCGCGuauggCCGcCGGcCa -3' miRNA: 3'- gCUGUG--AGCGGCGCGUua---GGC-GCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 70101 | 0.7 | 0.719091 |
Target: 5'- gGACACagCGCCGCGCuggaugacgguGAUgCGCGGc- -3' miRNA: 3'- gCUGUGa-GCGGCGCG-----------UUAgGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 187943 | 0.7 | 0.709612 |
Target: 5'- cCGA-ACUCGCCGCGC---UCGCGGg- -3' miRNA: 3'- -GCUgUGAGCGGCGCGuuaGGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 162576 | 0.71 | 0.68085 |
Target: 5'- cCGACuACcUGCUGCGCcGUCUGCGGcUCu -3' miRNA: 3'- -GCUG-UGaGCGGCGCGuUAGGCGCC-AG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 19692 | 0.71 | 0.67118 |
Target: 5'- cCGGCG-UUGCCGC-CAugucgcUCCGCGGUCa -3' miRNA: 3'- -GCUGUgAGCGGCGcGUu-----AGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 235233 | 0.72 | 0.622542 |
Target: 5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3' miRNA: 3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 402 | 0.72 | 0.622542 |
Target: 5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3' miRNA: 3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 174112 | 0.72 | 0.603084 |
Target: 5'- aCGGC-CUCgGCCGCGCGcgCCGCGc-- -3' miRNA: 3'- -GCUGuGAG-CGGCGCGUuaGGCGCcag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 901 | 0.73 | 0.535906 |
Target: 5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3' miRNA: 3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 162257 | 0.74 | 0.507881 |
Target: 5'- cCGGCGCaguUUGCgGCGCAgacGUCgGCGGUCc -3' miRNA: 3'- -GCUGUG---AGCGgCGCGU---UAGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 46539 | 0.66 | 0.920173 |
Target: 5'- cCGAgACU-GCCGCGCA--CCGuCGGg- -3' miRNA: 3'- -GCUgUGAgCGGCGCGUuaGGC-GCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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