miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 204722 0.74 0.471527
Target:  5'- cCGAgGCgCGcCCGCuGCGAUCUGCGGUUg -3'
miRNA:   3'- -GCUgUGaGC-GGCG-CGUUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 98613 0.69 0.756251
Target:  5'- --cCACUCGUccguaCGCGCGAccucgUCGCGGUCg -3'
miRNA:   3'- gcuGUGAGCG-----GCGCGUUa----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 133179 0.69 0.765313
Target:  5'- -cGCGCUCGCuuaacgugaCGCGUuaucgacgCCGCGGUCu -3'
miRNA:   3'- gcUGUGAGCG---------GCGCGuua-----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 46539 0.66 0.920173
Target:  5'- cCGAgACU-GCCGCGCA--CCGuCGGg- -3'
miRNA:   3'- -GCUgUGAgCGGCGCGUuaGGC-GCCag -5'
30232 3' -58.3 NC_006273.1 + 402 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 235233 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 162576 0.71 0.68085
Target:  5'- cCGACuACcUGCUGCGCcGUCUGCGGcUCu -3'
miRNA:   3'- -GCUG-UGaGCGGCGCGuUAGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 187943 0.7 0.709612
Target:  5'- cCGA-ACUCGCCGCGC---UCGCGGg- -3'
miRNA:   3'- -GCUgUGAGCGGCGCGuuaGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 214025 0.7 0.728502
Target:  5'- aGACGgUCGCCGUaaggcaGCAA-CUGCGGUg -3'
miRNA:   3'- gCUGUgAGCGGCG------CGUUaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 215015 0.69 0.74709
Target:  5'- -cGCAC-CGCCGgguCGCGGUCCGcCGGUg -3'
miRNA:   3'- gcUGUGaGCGGC---GCGUUAGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 175494 0.7 0.737838
Target:  5'- uCGuCACUCGCCGCGUugcGAcCUGCuguugGGUCg -3'
miRNA:   3'- -GCuGUGAGCGGCGCG---UUaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 17390 0.7 0.719091
Target:  5'- aGACGCggUUGCCGCGCGuauggCCGcCGGcCa -3'
miRNA:   3'- gCUGUG--AGCGGCGCGUua---GGC-GCCaG- -5'
30232 3' -58.3 NC_006273.1 + 162257 0.74 0.507881
Target:  5'- cCGGCGCaguUUGCgGCGCAgacGUCgGCGGUCc -3'
miRNA:   3'- -GCUGUG---AGCGgCGCGU---UAGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 203113 0.69 0.746169
Target:  5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3'
miRNA:   3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 901 0.73 0.535906
Target:  5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3'
miRNA:   3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 70101 0.7 0.719091
Target:  5'- gGACACagCGCCGCGCuggaugacgguGAUgCGCGGc- -3'
miRNA:   3'- gCUGUGa-GCGGCGCG-----------UUAgGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 41912 0.69 0.746169
Target:  5'- cCGGCauuauggACUUGCCGuCGCuGUCCGUGGa- -3'
miRNA:   3'- -GCUG-------UGAGCGGC-GCGuUAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 202014 0.69 0.765313
Target:  5'- uGGCACUCGCUGCGacacggggaCGcgCCGCaGGaUCg -3'
miRNA:   3'- gCUGUGAGCGGCGC---------GUuaGGCG-CC-AG- -5'
30232 3' -58.3 NC_006273.1 + 174112 0.72 0.603084
Target:  5'- aCGGC-CUCgGCCGCGCGcgCCGCGc-- -3'
miRNA:   3'- -GCUGuGAG-CGGCGCGUuaGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 19692 0.71 0.67118
Target:  5'- cCGGCG-UUGCCGC-CAugucgcUCCGCGGUCa -3'
miRNA:   3'- -GCUGUgAGCGGCGcGUu-----AGGCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.