Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 14116 | 0.67 | 0.877559 |
Target: 5'- cCGGCugUUuCUGCGCAccgGUCCGaacgcuaGGUCg -3' miRNA: 3'- -GCUGugAGcGGCGCGU---UAGGCg------CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 98613 | 0.69 | 0.756251 |
Target: 5'- --cCACUCGUccguaCGCGCGAccucgUCGCGGUCg -3' miRNA: 3'- gcuGUGAGCG-----GCGCGUUa----GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 901 | 0.73 | 0.535906 |
Target: 5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3' miRNA: 3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 10162 | 0.67 | 0.877559 |
Target: 5'- ---aACUcCGUCGUGaguUCCGCGGUCg -3' miRNA: 3'- gcugUGA-GCGGCGCguuAGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 162257 | 0.74 | 0.507881 |
Target: 5'- cCGGCGCaguUUGCgGCGCAgacGUCgGCGGUCc -3' miRNA: 3'- -GCUGUG---AGCGgCGCGU---UAGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 196143 | 0.66 | 0.914721 |
Target: 5'- gCGACACagcagCGUCGCGCcAUgCCGCGuGa- -3' miRNA: 3'- -GCUGUGa----GCGGCGCGuUA-GGCGC-Cag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 402 | 0.72 | 0.622542 |
Target: 5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3' miRNA: 3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 165673 | 0.66 | 0.908474 |
Target: 5'- aCGuCACcaccuUCGCCGCugccuacGCGAUCgGCGGcCg -3' miRNA: 3'- -GCuGUG-----AGCGGCG-------CGUUAGgCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 113170 | 0.66 | 0.903172 |
Target: 5'- -uACACcCGUaCGCGCAggcagcauggaGUCgCGCGGUCg -3' miRNA: 3'- gcUGUGaGCG-GCGCGU-----------UAG-GCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 30657 | 0.66 | 0.897079 |
Target: 5'- aGACGacgCGCCGgGCGGcuUCCuGCGGcCg -3' miRNA: 3'- gCUGUga-GCGGCgCGUU--AGG-CGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 171699 | 0.66 | 0.890136 |
Target: 5'- cCGGCGCU-GCUGCGCAucacGUCCucgaucaGCGGg- -3' miRNA: 3'- -GCUGUGAgCGGCGCGU----UAGG-------CGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 124054 | 0.67 | 0.884269 |
Target: 5'- gCGGCGCg-GCCGCGCua--UGCGGcCa -3' miRNA: 3'- -GCUGUGagCGGCGCGuuagGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 70653 | 0.67 | 0.877559 |
Target: 5'- aCGACACggugcUGCUGCGCGAcacgguggCgGCGGUg -3' miRNA: 3'- -GCUGUGa----GCGGCGCGUUa-------GgCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 205158 | 0.67 | 0.863548 |
Target: 5'- gGGCGCggaaaguguccUCGCCaCGCuggCCGCGGUg -3' miRNA: 3'- gCUGUG-----------AGCGGcGCGuuaGGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 29195 | 0.68 | 0.825311 |
Target: 5'- cCGAgGCgCGCUGCGUGcUCCgaucggGCGGUCg -3' miRNA: 3'- -GCUgUGaGCGGCGCGUuAGG------CGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 13081 | 0.68 | 0.799557 |
Target: 5'- uGGCAC-CGCCGaUGUcaguuggGAUCCGCGGaUCc -3' miRNA: 3'- gCUGUGaGCGGC-GCG-------UUAGGCGCC-AG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 133179 | 0.69 | 0.765313 |
Target: 5'- -cGCGCUCGCuuaacgugaCGCGUuaucgacgCCGCGGUCu -3' miRNA: 3'- gcUGUGAGCG---------GCGCGuua-----GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 203113 | 0.69 | 0.746169 |
Target: 5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3' miRNA: 3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 214025 | 0.7 | 0.728502 |
Target: 5'- aGACGgUCGCCGUaaggcaGCAA-CUGCGGUg -3' miRNA: 3'- gCUGUgAGCGGCG------CGUUaGGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 162576 | 0.71 | 0.68085 |
Target: 5'- cCGACuACcUGCUGCGCcGUCUGCGGcUCu -3' miRNA: 3'- -GCUG-UGaGCGGCGCGuUAGGCGCC-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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