miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 13081 0.68 0.799557
Target:  5'- uGGCAC-CGCCGaUGUcaguuggGAUCCGCGGaUCc -3'
miRNA:   3'- gCUGUGaGCGGC-GCG-------UUAGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 29195 0.68 0.825311
Target:  5'- cCGAgGCgCGCUGCGUGcUCCgaucggGCGGUCg -3'
miRNA:   3'- -GCUgUGaGCGGCGCGUuAGG------CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 110946 0.68 0.841127
Target:  5'- uCGGCGa--GCCGCGCAcgCCcgcGCGGcCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUuaGG---CGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 104632 0.66 0.90197
Target:  5'- gCGACGucCUCGgaGCGCAAgaaacaccguaaCCGCGGUUu -3'
miRNA:   3'- -GCUGU--GAGCggCGCGUUa-----------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 25418 0.66 0.893323
Target:  5'- uCGACugUUGCCGCGUGgcgcugcacaccuauGgcgCCGUGGg- -3'
miRNA:   3'- -GCUGugAGCGGCGCGU---------------Ua--GGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 116667 0.66 0.914721
Target:  5'- aGAUugUaCGCCGCGCuucggaaaAGUCCGagcuGGUUu -3'
miRNA:   3'- gCUGugA-GCGGCGCG--------UUAGGCg---CCAG- -5'
30232 3' -58.3 NC_006273.1 + 148852 0.66 0.909053
Target:  5'- uGGCugUUGCCGcCGCug-CCGCGuGa- -3'
miRNA:   3'- gCUGugAGCGGC-GCGuuaGGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 197297 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 217545 0.66 0.909053
Target:  5'- -aGCGCUCGUCGCGCuGUCgGgauaGGUg -3'
miRNA:   3'- gcUGUGAGCGGCGCGuUAGgCg---CCAg -5'
30232 3' -58.3 NC_006273.1 + 103006 0.66 0.914721
Target:  5'- aGACGC-CGUCGCGCAG-CCGUaaaucaaaGUCg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUaGGCGc-------CAG- -5'
30232 3' -58.3 NC_006273.1 + 144478 0.68 0.841127
Target:  5'- cCGGCGuCUCGCCGgGC-AUCCaguuCGGUa -3'
miRNA:   3'- -GCUGU-GAGCGGCgCGuUAGGc---GCCAg -5'
30232 3' -58.3 NC_006273.1 + 58471 0.66 0.914721
Target:  5'- uCGACGCUaG-CGCGCA--CCGCGG-Ca -3'
miRNA:   3'- -GCUGUGAgCgGCGCGUuaGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 149511 0.72 0.593382
Target:  5'- uGGCGCUUGuuGCGCGggCUGCGucGUCa -3'
miRNA:   3'- gCUGUGAGCggCGCGUuaGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 22005 0.68 0.841127
Target:  5'- gGGCuGCUgGCCGCGgGAUCgGUGGcCc -3'
miRNA:   3'- gCUG-UGAgCGGCGCgUUAGgCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 129244 0.68 0.825311
Target:  5'- gCGuGCGC-CGCCGCGgcCAAgCCGCuGGUCa -3'
miRNA:   3'- -GC-UGUGaGCGGCGC--GUUaGGCG-CCAG- -5'
30232 3' -58.3 NC_006273.1 + 190904 0.66 0.914721
Target:  5'- cCGcCGCUCGCC-CGUuGUCgCGCGGc- -3'
miRNA:   3'- -GCuGUGAGCGGcGCGuUAG-GCGCCag -5'
30232 3' -58.3 NC_006273.1 + 88588 0.68 0.841127
Target:  5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3'
miRNA:   3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 55017 0.66 0.920173
Target:  5'- gGGCGCgUCGUCGUG--AUCC-CGGUCg -3'
miRNA:   3'- gCUGUG-AGCGGCGCguUAGGcGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 124424 0.71 0.68085
Target:  5'- gCGACACgugcugCgGCCGCGCGggcGUgCGCGGcUCg -3'
miRNA:   3'- -GCUGUGa-----G-CGGCGCGU---UAgGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 192753 0.71 0.68085
Target:  5'- uGGCAgaCGCgGUgGCAGUuuGCGGUCu -3'
miRNA:   3'- gCUGUgaGCGgCG-CGUUAggCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.