miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30234 5' -55 NC_006273.1 + 194933 0.65 0.979318
Target:  5'- gGCGCg-GCGGGGuggguguguGCCGGgUGUGgCGGg -3'
miRNA:   3'- gCGUGgaCGUCCU---------UGGUCaACAC-GCC- -5'
30234 5' -55 NC_006273.1 + 40 0.65 0.979318
Target:  5'- gGCGCg-GCGGGGuggguguguGCCGGgUGUGgCGGg -3'
miRNA:   3'- gCGUGgaCGUCCU---------UGGUCaACAC-GCC- -5'
30234 5' -55 NC_006273.1 + 234871 0.65 0.979318
Target:  5'- gGCGCg-GCGGGGuggguguguGCCGGgUGUGgCGGg -3'
miRNA:   3'- gCGUGgaCGUCCU---------UGGUCaACAC-GCC- -5'
30234 5' -55 NC_006273.1 + 135229 0.66 0.976336
Target:  5'- gCGC-CCUGCAGugccacgagugucaGAACgAGaUGUGCGa -3'
miRNA:   3'- -GCGuGGACGUC--------------CUUGgUCaACACGCc -5'
30234 5' -55 NC_006273.1 + 31202 0.66 0.974606
Target:  5'- gCGCGCCacaUGguGGAggccauacggACCAcc-GUGCGGg -3'
miRNA:   3'- -GCGUGG---ACguCCU----------UGGUcaaCACGCC- -5'
30234 5' -55 NC_006273.1 + 106090 0.66 0.969158
Target:  5'- gGUACC--CGGGAGCCAGaUG-GUGGg -3'
miRNA:   3'- gCGUGGacGUCCUUGGUCaACaCGCC- -5'
30234 5' -55 NC_006273.1 + 189382 0.66 0.969158
Target:  5'- aCGCGugUGCGGGGACgaCGGgcGuUGCGGg -3'
miRNA:   3'- -GCGUggACGUCCUUG--GUCaaC-ACGCC- -5'
30234 5' -55 NC_006273.1 + 2039 0.66 0.966142
Target:  5'- aCGCGCCgugcgcgaugGCAGGAGCC----GUGgGGu -3'
miRNA:   3'- -GCGUGGa---------CGUCCUUGGucaaCACgCC- -5'
30234 5' -55 NC_006273.1 + 196932 0.66 0.966142
Target:  5'- aCGCGCCgugcgcgaugGCAGGAGCC----GUGgGGu -3'
miRNA:   3'- -GCGUGGa---------CGUCCUUGGucaaCACgCC- -5'
30234 5' -55 NC_006273.1 + 47456 0.66 0.966142
Target:  5'- gCGCugCUGCcagaauggauGGAugCGGUacaUGUGgCGGu -3'
miRNA:   3'- -GCGugGACGu---------CCUugGUCA---ACAC-GCC- -5'
30234 5' -55 NC_006273.1 + 94132 0.67 0.962924
Target:  5'- cCGUcaaaGCCUGCugcguGGuGAGCCGGUgcUGCGGu -3'
miRNA:   3'- -GCG----UGGACG-----UC-CUUGGUCAacACGCC- -5'
30234 5' -55 NC_006273.1 + 196795 0.67 0.9595
Target:  5'- gGCACagccGCAGGcgcucuGCCAGUUG-GCGa -3'
miRNA:   3'- gCGUGga--CGUCCu-----UGGUCAACaCGCc -5'
30234 5' -55 NC_006273.1 + 204713 0.67 0.9595
Target:  5'- gGCACCgcggccggccGCAGGAAgccgcCCGGcgcgucgucugUGUGCGGg -3'
miRNA:   3'- gCGUGGa---------CGUCCUU-----GGUCa----------ACACGCC- -5'
30234 5' -55 NC_006273.1 + 157741 0.67 0.955863
Target:  5'- aGCAUCUGCGuGAugCAGUcgcaggggaUGUGCa- -3'
miRNA:   3'- gCGUGGACGUcCUugGUCA---------ACACGcc -5'
30234 5' -55 NC_006273.1 + 16107 0.67 0.955863
Target:  5'- aCGC-CCuaUGUGGGuuuaAGCCuaAGUUGUGCGGc -3'
miRNA:   3'- -GCGuGG--ACGUCC----UUGG--UCAACACGCC- -5'
30234 5' -55 NC_006273.1 + 834 0.67 0.955488
Target:  5'- aGCGCCggggacgggguguUGCGGGcGCUcgggGGUUGgcgGCGGg -3'
miRNA:   3'- gCGUGG-------------ACGUCCuUGG----UCAACa--CGCC- -5'
30234 5' -55 NC_006273.1 + 40772 0.67 0.955488
Target:  5'- aGCGCCggggacgggguguUGCGGGcGCUcgggGGUUGgcgGCGGg -3'
miRNA:   3'- gCGUGG-------------ACGUCCuUGG----UCAACa--CGCC- -5'
30234 5' -55 NC_006273.1 + 177137 0.67 0.952011
Target:  5'- gCGCAUCUGUGGGGcgugacGCCGucaGUGUGGg -3'
miRNA:   3'- -GCGUGGACGUCCU------UGGUcaaCACGCC- -5'
30234 5' -55 NC_006273.1 + 166758 0.67 0.952011
Target:  5'- uGCugUUGCAGGuuCCGGUaGUG-GGu -3'
miRNA:   3'- gCGugGACGUCCuuGGUCAaCACgCC- -5'
30234 5' -55 NC_006273.1 + 79845 0.67 0.952011
Target:  5'- uGCACCaccucggGguGGAugCGGUg--GCGGu -3'
miRNA:   3'- gCGUGGa------CguCCUugGUCAacaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.