miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30234 5' -55 NC_006273.1 + 219280 1.11 0.004101
Target:  5'- cCGCACCUGCAGGAACCAGUUGUGCGGa -3'
miRNA:   3'- -GCGUGGACGUCCUUGGUCAACACGCC- -5'
30234 5' -55 NC_006273.1 + 217342 0.79 0.396478
Target:  5'- aGCgGCCUGUucgcgcaucacuAGGAACCAGUUG-GCGGg -3'
miRNA:   3'- gCG-UGGACG------------UCCUUGGUCAACaCGCC- -5'
30234 5' -55 NC_006273.1 + 40957 0.78 0.427877
Target:  5'- uGCGCCggggacggggggugUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCGUGG--------------ACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 1019 0.78 0.427877
Target:  5'- uGCGCCggggacggggggugUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCGUGG--------------ACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 117970 0.76 0.561189
Target:  5'- aGCACCUGgAGGAGCCGuagcgGCGGg -3'
miRNA:   3'- gCGUGGACgUCCUUGGUcaacaCGCC- -5'
30234 5' -55 NC_006273.1 + 73263 0.74 0.650756
Target:  5'- gCGCagaGCCUGguGGAACucauCAGUcgcggUGUGCGGa -3'
miRNA:   3'- -GCG---UGGACguCCUUG----GUCA-----ACACGCC- -5'
30234 5' -55 NC_006273.1 + 140888 0.74 0.650756
Target:  5'- cCGgGCCgcgGaCGGGAACCGGgaccccgGUGCGGg -3'
miRNA:   3'- -GCgUGGa--C-GUCCUUGGUCaa-----CACGCC- -5'
30234 5' -55 NC_006273.1 + 6447 0.74 0.694449
Target:  5'- cCGgGCCUGCcacuGGAccgccacguauucuaGCCAG-UGUGCGGg -3'
miRNA:   3'- -GCgUGGACGu---CCU---------------UGGUCaACACGCC- -5'
30234 5' -55 NC_006273.1 + 230605 0.73 0.710135
Target:  5'- gGUAUCUGCAgcuggaccuucuGGGACCAGUgGUGgCGGg -3'
miRNA:   3'- gCGUGGACGU------------CCUUGGUCAaCAC-GCC- -5'
30234 5' -55 NC_006273.1 + 115579 0.72 0.785437
Target:  5'- uGCugCUGCuguuguGGGugCGGacgGUGCGGg -3'
miRNA:   3'- gCGugGACGu-----CCUugGUCaa-CACGCC- -5'
30234 5' -55 NC_006273.1 + 36397 0.71 0.828509
Target:  5'- aGCACUgGCAGGggUggcaaaacgCAGUUGaGCGGg -3'
miRNA:   3'- gCGUGGaCGUCCuuG---------GUCAACaCGCC- -5'
30234 5' -55 NC_006273.1 + 52579 0.7 0.852369
Target:  5'- uGUucCCaGCAGGGACCG--UGUGCGGu -3'
miRNA:   3'- gCGu-GGaCGUCCUUGGUcaACACGCC- -5'
30234 5' -55 NC_006273.1 + 154671 0.7 0.852369
Target:  5'- gGCACCUGCGGGcaggugGGCCAGac--GUGGa -3'
miRNA:   3'- gCGUGGACGUCC------UUGGUCaacaCGCC- -5'
30234 5' -55 NC_006273.1 + 41005 0.7 0.85995
Target:  5'- gGggUgUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCguGgACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 186551 0.7 0.85995
Target:  5'- aCGCACCUguggccGCAGGAGCuuCAGgcccUGUGUGa -3'
miRNA:   3'- -GCGUGGA------CGUCCUUG--GUCa---ACACGCc -5'
30234 5' -55 NC_006273.1 + 1067 0.7 0.85995
Target:  5'- gGggUgUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCguGgACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 140725 0.7 0.874516
Target:  5'- gGCGgCgGCGGG-GCCGGcgcUUGUGCGGu -3'
miRNA:   3'- gCGUgGaCGUCCuUGGUC---AACACGCC- -5'
30234 5' -55 NC_006273.1 + 81748 0.7 0.874516
Target:  5'- aGC-CCUGCGcGGAGCCGGgc-UGCGa -3'
miRNA:   3'- gCGuGGACGU-CCUUGGUCaacACGCc -5'
30234 5' -55 NC_006273.1 + 73349 0.69 0.913124
Target:  5'- aGCACCaGCAGaaGAGCCAGcaccaGCGGg -3'
miRNA:   3'- gCGUGGaCGUC--CUUGGUCaaca-CGCC- -5'
30234 5' -55 NC_006273.1 + 198456 0.68 0.91878
Target:  5'- aCGcCACCUGCcGGuACCAGgUGUucGUGGa -3'
miRNA:   3'- -GC-GUGGACGuCCuUGGUCaACA--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.