Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30234 | 5' | -55 | NC_006273.1 | + | 58155 | 0.68 | 0.943645 |
Target: 5'- cCGCACCacgGUGGGGAaguaacacucaCGGUUGgGCGGg -3' miRNA: 3'- -GCGUGGa--CGUCCUUg----------GUCAACaCGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 221433 | 0.68 | 0.939127 |
Target: 5'- aCGCGCCUGUGGaGGGCCAaucGgaccGCGGg -3' miRNA: 3'- -GCGUGGACGUC-CUUGGUcaaCa---CGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 18480 | 0.68 | 0.939127 |
Target: 5'- uCGCACCgaGguGGAGCC-GUUGcucaUGCuGGg -3' miRNA: 3'- -GCGUGGa-CguCCUUGGuCAAC----ACG-CC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 41798 | 0.68 | 0.927873 |
Target: 5'- gGuCACCUGCGGGGaaacgagacugaaaGCCGcgugacgcuguuGUUGcUGCGGg -3' miRNA: 3'- gC-GUGGACGUCCU--------------UGGU------------CAAC-ACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 117637 | 0.68 | 0.924209 |
Target: 5'- gGCGCCcccgucGUGGGuuacGACCAGUUG-GCGGc -3' miRNA: 3'- gCGUGGa-----CGUCC----UUGGUCAACaCGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 198996 | 0.68 | 0.924209 |
Target: 5'- gGCGCUggugggGCAGGAua-AGUUgGUGCGGc -3' miRNA: 3'- gCGUGGa-----CGUCCUuggUCAA-CACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 104236 | 0.68 | 0.920979 |
Target: 5'- gCGCACCUcgccgccguguucggGCGaGAGCaCGGgcGUGCGGa -3' miRNA: 3'- -GCGUGGA---------------CGUcCUUG-GUCaaCACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 198456 | 0.68 | 0.91878 |
Target: 5'- aCGcCACCUGCcGGuACCAGgUGUucGUGGa -3' miRNA: 3'- -GC-GUGGACGuCCuUGGUCaACA--CGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 73349 | 0.69 | 0.913124 |
Target: 5'- aGCACCaGCAGaaGAGCCAGcaccaGCGGg -3' miRNA: 3'- gCGUGGaCGUC--CUUGGUCaaca-CGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 81748 | 0.7 | 0.874516 |
Target: 5'- aGC-CCUGCGcGGAGCCGGgc-UGCGa -3' miRNA: 3'- gCGuGGACGU-CCUUGGUCaacACGCc -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 140725 | 0.7 | 0.874516 |
Target: 5'- gGCGgCgGCGGG-GCCGGcgcUUGUGCGGu -3' miRNA: 3'- gCGUgGaCGUCCuUGGUC---AACACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 1067 | 0.7 | 0.85995 |
Target: 5'- gGggUgUGCGGGGACgGGgggUGUGCGGg -3' miRNA: 3'- gCguGgACGUCCUUGgUCa--ACACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 186551 | 0.7 | 0.85995 |
Target: 5'- aCGCACCUguggccGCAGGAGCuuCAGgcccUGUGUGa -3' miRNA: 3'- -GCGUGGA------CGUCCUUG--GUCa---ACACGCc -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 41005 | 0.7 | 0.85995 |
Target: 5'- gGggUgUGCGGGGACgGGgggUGUGCGGg -3' miRNA: 3'- gCguGgACGUCCUUGgUCa--ACACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 154671 | 0.7 | 0.852369 |
Target: 5'- gGCACCUGCGGGcaggugGGCCAGac--GUGGa -3' miRNA: 3'- gCGUGGACGUCC------UUGGUCaacaCGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 52579 | 0.7 | 0.852369 |
Target: 5'- uGUucCCaGCAGGGACCG--UGUGCGGu -3' miRNA: 3'- gCGu-GGaCGUCCUUGGUcaACACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 36397 | 0.71 | 0.828509 |
Target: 5'- aGCACUgGCAGGggUggcaaaacgCAGUUGaGCGGg -3' miRNA: 3'- gCGUGGaCGUCCuuG---------GUCAACaCGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 115579 | 0.72 | 0.785437 |
Target: 5'- uGCugCUGCuguuguGGGugCGGacgGUGCGGg -3' miRNA: 3'- gCGugGACGu-----CCUugGUCaa-CACGCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 230605 | 0.73 | 0.710135 |
Target: 5'- gGUAUCUGCAgcuggaccuucuGGGACCAGUgGUGgCGGg -3' miRNA: 3'- gCGUGGACGU------------CCUUGGUCAaCAC-GCC- -5' |
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30234 | 5' | -55 | NC_006273.1 | + | 6447 | 0.74 | 0.694449 |
Target: 5'- cCGgGCCUGCcacuGGAccgccacguauucuaGCCAG-UGUGCGGg -3' miRNA: 3'- -GCgUGGACGu---CCU---------------UGGUCaACACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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