miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30234 5' -55 NC_006273.1 + 31202 0.66 0.974606
Target:  5'- gCGCGCCacaUGguGGAggccauacggACCAcc-GUGCGGg -3'
miRNA:   3'- -GCGUGG---ACguCCU----------UGGUcaaCACGCC- -5'
30234 5' -55 NC_006273.1 + 41798 0.68 0.927873
Target:  5'- gGuCACCUGCGGGGaaacgagacugaaaGCCGcgugacgcuguuGUUGcUGCGGg -3'
miRNA:   3'- gC-GUGGACGUCCU--------------UGGU------------CAAC-ACGCC- -5'
30234 5' -55 NC_006273.1 + 221433 0.68 0.939127
Target:  5'- aCGCGCCUGUGGaGGGCCAaucGgaccGCGGg -3'
miRNA:   3'- -GCGUGGACGUC-CUUGGUcaaCa---CGCC- -5'
30234 5' -55 NC_006273.1 + 58155 0.68 0.943645
Target:  5'- cCGCACCacgGUGGGGAaguaacacucaCGGUUGgGCGGg -3'
miRNA:   3'- -GCGUGGa--CGUCCUUg----------GUCAACaCGCC- -5'
30234 5' -55 NC_006273.1 + 834 0.67 0.955488
Target:  5'- aGCGCCggggacgggguguUGCGGGcGCUcgggGGUUGgcgGCGGg -3'
miRNA:   3'- gCGUGG-------------ACGUCCuUGG----UCAACa--CGCC- -5'
30234 5' -55 NC_006273.1 + 16107 0.67 0.955863
Target:  5'- aCGC-CCuaUGUGGGuuuaAGCCuaAGUUGUGCGGc -3'
miRNA:   3'- -GCGuGG--ACGUCC----UUGG--UCAACACGCC- -5'
30234 5' -55 NC_006273.1 + 204713 0.67 0.9595
Target:  5'- gGCACCgcggccggccGCAGGAAgccgcCCGGcgcgucgucugUGUGCGGg -3'
miRNA:   3'- gCGUGGa---------CGUCCUU-----GGUCa----------ACACGCC- -5'
30234 5' -55 NC_006273.1 + 196932 0.66 0.966142
Target:  5'- aCGCGCCgugcgcgaugGCAGGAGCC----GUGgGGu -3'
miRNA:   3'- -GCGUGGa---------CGUCCUUGGucaaCACgCC- -5'
30234 5' -55 NC_006273.1 + 106090 0.66 0.969158
Target:  5'- gGUACC--CGGGAGCCAGaUG-GUGGg -3'
miRNA:   3'- gCGUGGacGUCCUUGGUCaACaCGCC- -5'
30234 5' -55 NC_006273.1 + 117637 0.68 0.924209
Target:  5'- gGCGCCcccgucGUGGGuuacGACCAGUUG-GCGGc -3'
miRNA:   3'- gCGUGGa-----CGUCC----UUGGUCAACaCGCC- -5'
30234 5' -55 NC_006273.1 + 104236 0.68 0.920979
Target:  5'- gCGCACCUcgccgccguguucggGCGaGAGCaCGGgcGUGCGGa -3'
miRNA:   3'- -GCGUGGA---------------CGUcCUUG-GUCaaCACGCC- -5'
30234 5' -55 NC_006273.1 + 73349 0.69 0.913124
Target:  5'- aGCACCaGCAGaaGAGCCAGcaccaGCGGg -3'
miRNA:   3'- gCGUGGaCGUC--CUUGGUCaaca-CGCC- -5'
30234 5' -55 NC_006273.1 + 217342 0.79 0.396478
Target:  5'- aGCgGCCUGUucgcgcaucacuAGGAACCAGUUG-GCGGg -3'
miRNA:   3'- gCG-UGGACG------------UCCUUGGUCAACaCGCC- -5'
30234 5' -55 NC_006273.1 + 1019 0.78 0.427877
Target:  5'- uGCGCCggggacggggggugUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCGUGG--------------ACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 73263 0.74 0.650756
Target:  5'- gCGCagaGCCUGguGGAACucauCAGUcgcggUGUGCGGa -3'
miRNA:   3'- -GCG---UGGACguCCUUG----GUCA-----ACACGCC- -5'
30234 5' -55 NC_006273.1 + 230605 0.73 0.710135
Target:  5'- gGUAUCUGCAgcuggaccuucuGGGACCAGUgGUGgCGGg -3'
miRNA:   3'- gCGUGGACGU------------CCUUGGUCAaCAC-GCC- -5'
30234 5' -55 NC_006273.1 + 115579 0.72 0.785437
Target:  5'- uGCugCUGCuguuguGGGugCGGacgGUGCGGg -3'
miRNA:   3'- gCGugGACGu-----CCUugGUCaa-CACGCC- -5'
30234 5' -55 NC_006273.1 + 1067 0.7 0.85995
Target:  5'- gGggUgUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCguGgACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 81748 0.7 0.874516
Target:  5'- aGC-CCUGCGcGGAGCCGGgc-UGCGa -3'
miRNA:   3'- gCGuGGACGU-CCUUGGUCaacACGCc -5'
30234 5' -55 NC_006273.1 + 140725 0.7 0.874516
Target:  5'- gGCGgCgGCGGG-GCCGGcgcUUGUGCGGu -3'
miRNA:   3'- gCGUgGaCGUCCuUGGUC---AACACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.