miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30234 5' -55 NC_006273.1 + 40957 0.78 0.427877
Target:  5'- uGCGCCggggacggggggugUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCGUGG--------------ACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 196795 0.67 0.9595
Target:  5'- gGCACagccGCAGGcgcucuGCCAGUUG-GCGa -3'
miRNA:   3'- gCGUGga--CGUCCu-----UGGUCAACaCGCc -5'
30234 5' -55 NC_006273.1 + 2039 0.66 0.966142
Target:  5'- aCGCGCCgugcgcgaugGCAGGAGCC----GUGgGGu -3'
miRNA:   3'- -GCGUGGa---------CGUCCUUGGucaaCACgCC- -5'
30234 5' -55 NC_006273.1 + 234871 0.65 0.979318
Target:  5'- gGCGCg-GCGGGGuggguguguGCCGGgUGUGgCGGg -3'
miRNA:   3'- gCGUGgaCGUCCU---------UGGUCaACAC-GCC- -5'
30234 5' -55 NC_006273.1 + 36397 0.71 0.828509
Target:  5'- aGCACUgGCAGGggUggcaaaacgCAGUUGaGCGGg -3'
miRNA:   3'- gCGUGGaCGUCCuuG---------GUCAACaCGCC- -5'
30234 5' -55 NC_006273.1 + 52579 0.7 0.852369
Target:  5'- uGUucCCaGCAGGGACCG--UGUGCGGu -3'
miRNA:   3'- gCGu-GGaCGUCCUUGGUcaACACGCC- -5'
30234 5' -55 NC_006273.1 + 41005 0.7 0.85995
Target:  5'- gGggUgUGCGGGGACgGGgggUGUGCGGg -3'
miRNA:   3'- gCguGgACGUCCUUGgUCa--ACACGCC- -5'
30234 5' -55 NC_006273.1 + 186551 0.7 0.85995
Target:  5'- aCGCACCUguggccGCAGGAGCuuCAGgcccUGUGUGa -3'
miRNA:   3'- -GCGUGGA------CGUCCUUG--GUCa---ACACGCc -5'
30234 5' -55 NC_006273.1 + 18480 0.68 0.939127
Target:  5'- uCGCACCgaGguGGAGCC-GUUGcucaUGCuGGg -3'
miRNA:   3'- -GCGUGGa-CguCCUUGGuCAAC----ACG-CC- -5'
30234 5' -55 NC_006273.1 + 157741 0.67 0.955863
Target:  5'- aGCAUCUGCGuGAugCAGUcgcaggggaUGUGCa- -3'
miRNA:   3'- gCGUGGACGUcCUugGUCA---------ACACGcc -5'
30234 5' -55 NC_006273.1 + 79845 0.67 0.952011
Target:  5'- uGCACCaccucggGguGGAugCGGUg--GCGGu -3'
miRNA:   3'- gCGUGGa------CguCCUugGUCAacaCGCC- -5'
30234 5' -55 NC_006273.1 + 198996 0.68 0.924209
Target:  5'- gGCGCUggugggGCAGGAua-AGUUgGUGCGGc -3'
miRNA:   3'- gCGUGGa-----CGUCCUuggUCAA-CACGCC- -5'
30234 5' -55 NC_006273.1 + 117970 0.76 0.561189
Target:  5'- aGCACCUGgAGGAGCCGuagcgGCGGg -3'
miRNA:   3'- gCGUGGACgUCCUUGGUcaacaCGCC- -5'
30234 5' -55 NC_006273.1 + 177137 0.67 0.952011
Target:  5'- gCGCAUCUGUGGGGcgugacGCCGucaGUGUGGg -3'
miRNA:   3'- -GCGUGGACGUCCU------UGGUcaaCACGCC- -5'
30234 5' -55 NC_006273.1 + 140888 0.74 0.650756
Target:  5'- cCGgGCCgcgGaCGGGAACCGGgaccccgGUGCGGg -3'
miRNA:   3'- -GCgUGGa--C-GUCCUUGGUCaa-----CACGCC- -5'
30234 5' -55 NC_006273.1 + 198456 0.68 0.91878
Target:  5'- aCGcCACCUGCcGGuACCAGgUGUucGUGGa -3'
miRNA:   3'- -GC-GUGGACGuCCuUGGUCaACA--CGCC- -5'
30234 5' -55 NC_006273.1 + 40772 0.67 0.955488
Target:  5'- aGCGCCggggacgggguguUGCGGGcGCUcgggGGUUGgcgGCGGg -3'
miRNA:   3'- gCGUGG-------------ACGUCCuUGG----UCAACa--CGCC- -5'
30234 5' -55 NC_006273.1 + 94132 0.67 0.962924
Target:  5'- cCGUcaaaGCCUGCugcguGGuGAGCCGGUgcUGCGGu -3'
miRNA:   3'- -GCG----UGGACG-----UC-CUUGGUCAacACGCC- -5'
30234 5' -55 NC_006273.1 + 6447 0.74 0.694449
Target:  5'- cCGgGCCUGCcacuGGAccgccacguauucuaGCCAG-UGUGCGGg -3'
miRNA:   3'- -GCgUGGACGu---CCU---------------UGGUCaACACGCC- -5'
30234 5' -55 NC_006273.1 + 154671 0.7 0.852369
Target:  5'- gGCACCUGCGGGcaggugGGCCAGac--GUGGa -3'
miRNA:   3'- gCGUGGACGUCC------UUGGUCaacaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.