miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 3' -59.2 NC_006273.1 + 69975 0.66 0.894261
Target:  5'- cCGUuacCGUCCCGUUACGCCggaGGC-Cg -3'
miRNA:   3'- -GCGccuGCAGGGCAGUGCGGa--UCGuG- -5'
30235 3' -59.2 NC_006273.1 + 87884 0.66 0.894261
Target:  5'- aGCaGccACcUCCCGUCuCGCCgGGCACg -3'
miRNA:   3'- gCGcC--UGcAGGGCAGuGCGGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 213644 0.66 0.894261
Target:  5'- -uCGGGCGUCCacaGguacCGCGUCUgugAGCGCg -3'
miRNA:   3'- gcGCCUGCAGGg--Ca---GUGCGGA---UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 8657 0.66 0.894261
Target:  5'- -uUGGGUG-CCCGUCACGCa-GGCGCu -3'
miRNA:   3'- gcGCCUGCaGGGCAGUGCGgaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 204143 0.66 0.893634
Target:  5'- gCGCGGcuacccgGCGUaCCGUguCGCCccGCACg -3'
miRNA:   3'- -GCGCC-------UGCAgGGCAguGCGGauCGUG- -5'
30235 3' -59.2 NC_006273.1 + 168304 0.66 0.887906
Target:  5'- uCGCGG-CGaCUCGUCGCGCgCcAGuCGCa -3'
miRNA:   3'- -GCGCCuGCaGGGCAGUGCG-GaUC-GUG- -5'
30235 3' -59.2 NC_006273.1 + 205160 0.66 0.887906
Target:  5'- gCGCGGAaagUGUCCuCGcCACG-CUGGcCGCg -3'
miRNA:   3'- -GCGCCU---GCAGG-GCaGUGCgGAUC-GUG- -5'
30235 3' -59.2 NC_006273.1 + 234593 0.66 0.887906
Target:  5'- aCGCGGACGgCuCCGUCGuccgugUGCCacGGCAg -3'
miRNA:   3'- -GCGCCUGCaG-GGCAGU------GCGGa-UCGUg -5'
30235 3' -59.2 NC_006273.1 + 82580 0.66 0.887906
Target:  5'- uGUGGAgCGcCUCGUUGCGCCagAGCGu -3'
miRNA:   3'- gCGCCU-GCaGGGCAGUGCGGa-UCGUg -5'
30235 3' -59.2 NC_006273.1 + 84831 0.66 0.887906
Target:  5'- cCGUGGACGguuggCCCGUgG-GCCUGGg-- -3'
miRNA:   3'- -GCGCCUGCa----GGGCAgUgCGGAUCgug -5'
30235 3' -59.2 NC_006273.1 + 39701 0.66 0.887906
Target:  5'- aCGCGGACGgCuCCGUCGuccgugUGCCacGGCAg -3'
miRNA:   3'- -GCGCCUGCaG-GGCAGU------GCGGa-UCGUg -5'
30235 3' -59.2 NC_006273.1 + 113149 0.66 0.881349
Target:  5'- aGCGGugGUCgCCacuaUCAC-CCgGGCACu -3'
miRNA:   3'- gCGCCugCAG-GGc---AGUGcGGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 30378 0.66 0.881349
Target:  5'- uCGCGG-CGUCgcagcUCGUCACGUcgcuCUGGCGa -3'
miRNA:   3'- -GCGCCuGCAG-----GGCAGUGCG----GAUCGUg -5'
30235 3' -59.2 NC_006273.1 + 102840 0.66 0.874594
Target:  5'- gCGcCGGccGCGUCCaCGggCACGCUguugggugGGCACg -3'
miRNA:   3'- -GC-GCC--UGCAGG-GCa-GUGCGGa-------UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 38985 0.66 0.874594
Target:  5'- aCGCGGAa--CCCG--GCGCCcAGCGCc -3'
miRNA:   3'- -GCGCCUgcaGGGCagUGCGGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 233878 0.66 0.874594
Target:  5'- aCGCGGAa--CCCG--GCGCCcAGCGCc -3'
miRNA:   3'- -GCGCCUgcaGGGCagUGCGGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 88035 0.66 0.873908
Target:  5'- gGCGG-CGUCCguuaaucgcugggCGUCgGCGUCcAGCACg -3'
miRNA:   3'- gCGCCuGCAGG-------------GCAG-UGCGGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 8884 0.66 0.871838
Target:  5'- cCGUGGGCGcgacgaaacccaCCGUCACGguCCgAGCACa -3'
miRNA:   3'- -GCGCCUGCag----------GGCAGUGC--GGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 171232 0.66 0.867645
Target:  5'- cCGCGG-CGUUCCaaguucUCGCGaCUUAGUACg -3'
miRNA:   3'- -GCGCCuGCAGGGc-----AGUGC-GGAUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 175063 0.66 0.867645
Target:  5'- gGCGGcgucgucaguugGCGUCCCGagUCGcCGUCUcccgacGGCACg -3'
miRNA:   3'- gCGCC------------UGCAGGGC--AGU-GCGGA------UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.