miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 3' -59.2 NC_006273.1 + 175063 0.66 0.867645
Target:  5'- gGCGGcgucgucaguugGCGUCCCGagUCGcCGUCUcccgacGGCACg -3'
miRNA:   3'- gCGCC------------UGCAGGGC--AGU-GCGGA------UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 161190 0.66 0.860506
Target:  5'- uGCGaGCG-CCCGUCAagcucgucuCGCC-GGCGCg -3'
miRNA:   3'- gCGCcUGCaGGGCAGU---------GCGGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 40737 0.66 0.860506
Target:  5'- uGCGuGGCGUCCCGcgguguuuuuuuUCGCGgaCC-AGCGCc -3'
miRNA:   3'- gCGC-CUGCAGGGC------------AGUGC--GGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 799 0.66 0.860506
Target:  5'- uGCGuGGCGUCCCGcgguguuuuuuuUCGCGgaCC-AGCGCc -3'
miRNA:   3'- gCGC-CUGCAGGGC------------AGUGC--GGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 60403 0.66 0.860506
Target:  5'- aGCGGACGcuUCCuUGUCACcCCcgGGCAg -3'
miRNA:   3'- gCGCCUGC--AGG-GCAGUGcGGa-UCGUg -5'
30235 3' -59.2 NC_006273.1 + 140751 0.67 0.853183
Target:  5'- gCGCGGACcccggGUCCCGUC-CGUUccGCGg -3'
miRNA:   3'- -GCGCCUG-----CAGGGCAGuGCGGauCGUg -5'
30235 3' -59.2 NC_006273.1 + 234112 0.67 0.841096
Target:  5'- aGCGGcagcaGCGUgCCCGcgUCGCGCUgcgaccacuugcgcaUGGCGCg -3'
miRNA:   3'- gCGCC-----UGCA-GGGC--AGUGCGG---------------AUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 39219 0.67 0.841096
Target:  5'- aGCGGcagcaGCGUgCCCGcgUCGCGCUgcgaccacuugcgcaUGGCGCg -3'
miRNA:   3'- gCGCC-----UGCA-GGGC--AGUGCGG---------------AUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 201989 0.67 0.838005
Target:  5'- gGCGGugcGCGUCCa---GCGCCUacucuGGCACu -3'
miRNA:   3'- gCGCC---UGCAGGgcagUGCGGA-----UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 168083 0.67 0.830162
Target:  5'- --aGGACcaGUCCCGccggCGCGCC-AGCAUg -3'
miRNA:   3'- gcgCCUG--CAGGGCa---GUGCGGaUCGUG- -5'
30235 3' -59.2 NC_006273.1 + 71647 0.67 0.813998
Target:  5'- aCGaggaGGACGUCgcugcuaaaccgCCG-CGCGCCUGcuGCACa -3'
miRNA:   3'- -GCg---CCUGCAG------------GGCaGUGCGGAU--CGUG- -5'
30235 3' -59.2 NC_006273.1 + 234344 0.68 0.805691
Target:  5'- gGUGGACGccguggCCCGgCGuCGCCguaGGCGCa -3'
miRNA:   3'- gCGCCUGCa-----GGGCaGU-GCGGa--UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 39451 0.68 0.805691
Target:  5'- gGUGGACGccguggCCCGgCGuCGCCguaGGCGCa -3'
miRNA:   3'- gCGCCUGCa-----GGGCaGU-GCGGa--UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 1982 0.68 0.805691
Target:  5'- aCGgGGACGa--CGUCGCGCC-AGCGg -3'
miRNA:   3'- -GCgCCUGCaggGCAGUGCGGaUCGUg -5'
30235 3' -59.2 NC_006273.1 + 170108 0.68 0.797244
Target:  5'- gGCGGugGUCgUUGUCGCuGCCguguccGCGCu -3'
miRNA:   3'- gCGCCugCAG-GGCAGUG-CGGau----CGUG- -5'
30235 3' -59.2 NC_006273.1 + 38103 0.68 0.797244
Target:  5'- gGCGGGCG-CCgacUCGCGCCccAGCGCc -3'
miRNA:   3'- gCGCCUGCaGGgc-AGUGCGGa-UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 62188 0.68 0.797244
Target:  5'- gCGCGGcccuACGUCaauUGUCGCGCCgUGGC-Cg -3'
miRNA:   3'- -GCGCC----UGCAGg--GCAGUGCGG-AUCGuG- -5'
30235 3' -59.2 NC_006273.1 + 232996 0.68 0.797244
Target:  5'- gGCGGGCG-CCgacUCGCGCCccAGCGCc -3'
miRNA:   3'- gCGCCUGCaGGgc-AGUGCGGa-UCGUG- -5'
30235 3' -59.2 NC_006273.1 + 32288 0.68 0.788662
Target:  5'- aGCGGGacCGUCaCCGUCGCGaCCgccGCGa -3'
miRNA:   3'- gCGCCU--GCAG-GGCAGUGC-GGau-CGUg -5'
30235 3' -59.2 NC_006273.1 + 118770 0.68 0.779955
Target:  5'- cCGCGGuacgcACGUCgCCGUcCAUGUCgcuGCGCa -3'
miRNA:   3'- -GCGCC-----UGCAG-GGCA-GUGCGGau-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.