miRNA display CGI


Results 1 - 20 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 2505 0.66 0.983749
Target:  5'- cGCGcugugGGCgCGcGAgccGCACGGGCAGUUa -3'
miRNA:   3'- -CGCa----CCG-GU-CUaauCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 13564 0.66 0.983749
Target:  5'- gGCGcaacGCCGGGUgcucacccGC-CGGGCGGCCc -3'
miRNA:   3'- -CGCac--CGGUCUAau------CGuGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 16897 0.66 0.983749
Target:  5'- cGCGcGGCCAGGcUGGaacgcaACGGA-GGCUg -3'
miRNA:   3'- -CGCaCCGGUCUaAUCg-----UGCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 49277 0.66 0.983749
Target:  5'- -gGUGGUaaCAGGUgauGCGCGGcACGGUa -3'
miRNA:   3'- cgCACCG--GUCUAau-CGUGCC-UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 162926 0.66 0.983749
Target:  5'- aCGUGGCCGcc--GGCACcGACGGUg -3'
miRNA:   3'- cGCACCGGUcuaaUCGUGcCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 36824 0.66 0.983566
Target:  5'- cGUGUGGUguaacugCGGAgacUGGCAgGGACacgcgcuacguAGCCg -3'
miRNA:   3'- -CGCACCG-------GUCUa--AUCGUgCCUG-----------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 68067 0.66 0.982432
Target:  5'- cCGUGGCCGccgcugccgccgcugUGGC-CGGAguGCCc -3'
miRNA:   3'- cGCACCGGUcua------------AUCGuGCCUguCGG- -5'
30235 5' -54.5 NC_006273.1 + 86595 0.66 0.981844
Target:  5'- cCGUGGCauuGAgacGCACGGcGCcGCCg -3'
miRNA:   3'- cGCACCGgu-CUaauCGUGCC-UGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 64234 0.66 0.981844
Target:  5'- aGCGccgaugaccUGGCCcGcg-GGCACGGGCguugcggcggcGGCCg -3'
miRNA:   3'- -CGC---------ACCGGuCuaaUCGUGCCUG-----------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 146494 0.66 0.981844
Target:  5'- gGCuGUGGCCAGcgccUGGUACuuGACAcuGCCg -3'
miRNA:   3'- -CG-CACCGGUCua--AUCGUGc-CUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 206129 0.66 0.981844
Target:  5'- gGUGUcGGCguG---GGCACGGACAGg- -3'
miRNA:   3'- -CGCA-CCGguCuaaUCGUGCCUGUCgg -5'
30235 5' -54.5 NC_006273.1 + 32050 0.66 0.981844
Target:  5'- uGCGUGGCgCGGuu--GCAaGcGCAGCCc -3'
miRNA:   3'- -CGCACCG-GUCuaauCGUgCcUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 8104 0.66 0.981645
Target:  5'- cGCGUcGCCAGAaaAGCAgCGGgugacgcACGGCUu -3'
miRNA:   3'- -CGCAcCGGUCUaaUCGU-GCC-------UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156933 0.66 0.981645
Target:  5'- gGCGUGGUUucccGGUcggacgcgauugaUGGCACGGACGacgacGCUg -3'
miRNA:   3'- -CGCACCGGu---CUA-------------AUCGUGCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 133479 0.66 0.979776
Target:  5'- gGCGUgcaGGCgCGGAc--GCugGcGGCGGCCc -3'
miRNA:   3'- -CGCA---CCG-GUCUaauCGugC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 33426 0.66 0.979776
Target:  5'- gGCGUcGGC------GGCGCGcGACAGCCc -3'
miRNA:   3'- -CGCA-CCGgucuaaUCGUGC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 31738 0.66 0.979776
Target:  5'- -aGUGGCuCGGGUcGGCugguCGGGCcGUCg -3'
miRNA:   3'- cgCACCG-GUCUAaUCGu---GCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 218610 0.66 0.979776
Target:  5'- ---cGGCUAGAcgcuGCAgGGGCGGCg -3'
miRNA:   3'- cgcaCCGGUCUaau-CGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 155805 0.66 0.977537
Target:  5'- aCGUGGCCAuGUcgcgAGuCACGGACcccgAGCa -3'
miRNA:   3'- cGCACCGGUcUAa---UC-GUGCCUG----UCGg -5'
30235 5' -54.5 NC_006273.1 + 29806 0.66 0.977537
Target:  5'- uGCG-GGCCAGGU-AGUagACGG-CGGUg -3'
miRNA:   3'- -CGCaCCGGUCUAaUCG--UGCCuGUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.