miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 196808 0.66 0.977537
Target:  5'- uGCGgcUGGCUGGcgcugGGCGCGGuGCuGCCc -3'
miRNA:   3'- -CGC--ACCGGUCuaa--UCGUGCC-UGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 33387 0.66 0.975121
Target:  5'- aGCGaGuGCCAGAguaGGCGCuGGACGcgcaccGCCu -3'
miRNA:   3'- -CGCaC-CGGUCUaa-UCGUG-CCUGU------CGG- -5'
30235 5' -54.5 NC_006273.1 + 185548 0.66 0.975121
Target:  5'- uCGUGGCUguGGcgUAGCGCGuuuuguACAGCg -3'
miRNA:   3'- cGCACCGG--UCuaAUCGUGCc-----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 133479 0.66 0.979776
Target:  5'- gGCGUgcaGGCgCGGAc--GCugGcGGCGGCCc -3'
miRNA:   3'- -CGCA---CCG-GUCUaauCGugC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 61701 0.66 0.975121
Target:  5'- cCGUGaGCCaauuggAGAUcGGCGCGGugGauGCCc -3'
miRNA:   3'- cGCAC-CGG------UCUAaUCGUGCCugU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 213122 0.66 0.977537
Target:  5'- cGCGUGGCUgcgauGGAgcGGCACGaugguGACcGUCg -3'
miRNA:   3'- -CGCACCGG-----UCUaaUCGUGC-----CUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 155805 0.66 0.977537
Target:  5'- aCGUGGCCAuGUcgcgAGuCACGGACcccgAGCa -3'
miRNA:   3'- cGCACCGGUcUAa---UC-GUGCCUG----UCGg -5'
30235 5' -54.5 NC_006273.1 + 218610 0.66 0.979776
Target:  5'- ---cGGCUAGAcgcuGCAgGGGCGGCg -3'
miRNA:   3'- cgcaCCGGUCUaau-CGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 146494 0.66 0.981844
Target:  5'- gGCuGUGGCCAGcgccUGGUACuuGACAcuGCCg -3'
miRNA:   3'- -CG-CACCGGUCua--AUCGUGc-CUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 40654 0.66 0.975121
Target:  5'- --uUGGCCGGGgacggagaggcUgacgaaAGCAUGGACAGCg -3'
miRNA:   3'- cgcACCGGUCU-----------Aa-----UCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 34739 0.66 0.975121
Target:  5'- gGCGUGcGacacaaCAGGccGGCGCGcACAGCCu -3'
miRNA:   3'- -CGCAC-Cg-----GUCUaaUCGUGCcUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 222827 0.66 0.975121
Target:  5'- gGCcUGGCCgcAGAgcAGCaACGGACGcGUCa -3'
miRNA:   3'- -CGcACCGG--UCUaaUCG-UGCCUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 13564 0.66 0.983749
Target:  5'- gGCGcaacGCCGGGUgcucacccGC-CGGGCGGCCc -3'
miRNA:   3'- -CGCac--CGGUCUAau------CGuGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 33426 0.66 0.979776
Target:  5'- gGCGUcGGC------GGCGCGcGACAGCCc -3'
miRNA:   3'- -CGCA-CCGgucuaaUCGUGC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 94840 0.66 0.972521
Target:  5'- gGUG-GGCCGGGUggacggUGGUggGGACGGgCg -3'
miRNA:   3'- -CGCaCCGGUCUA------AUCGugCCUGUCgG- -5'
30235 5' -54.5 NC_006273.1 + 29806 0.66 0.977537
Target:  5'- uGCG-GGCCAGGU-AGUagACGG-CGGUg -3'
miRNA:   3'- -CGCaCCGGUCUAaUCG--UGCCuGUCGg -5'
30235 5' -54.5 NC_006273.1 + 64234 0.66 0.981844
Target:  5'- aGCGccgaugaccUGGCCcGcg-GGCACGGGCguugcggcggcGGCCg -3'
miRNA:   3'- -CGC---------ACCGGuCuaaUCGUGCCUG-----------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 232232 0.66 0.972521
Target:  5'- aGCGgGGUCGGGguagGGUACGGugGGa- -3'
miRNA:   3'- -CGCaCCGGUCUaa--UCGUGCCugUCgg -5'
30235 5' -54.5 NC_006273.1 + 32050 0.66 0.981844
Target:  5'- uGCGUGGCgCGGuu--GCAaGcGCAGCCc -3'
miRNA:   3'- -CGCACCG-GUCuaauCGUgCcUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 21886 0.66 0.972521
Target:  5'- uGCGUGcccuucaucaGCCAGAgcauCGCGGacaacaacuGCAGCCg -3'
miRNA:   3'- -CGCAC----------CGGUCUaaucGUGCC---------UGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.