miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 119595 0.67 0.956546
Target:  5'- cGC-UGGUCGGcg-GGUGCGGugAGUCg -3'
miRNA:   3'- -CGcACCGGUCuaaUCGUGCCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 221782 0.67 0.960156
Target:  5'- gGCGUGgGgCGGcccuccAGCACGG-CGGCCc -3'
miRNA:   3'- -CGCAC-CgGUCuaa---UCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 232179 0.67 0.960156
Target:  5'- uGCGUGGCUAcAUUAGaaaACGuGACGcGUCg -3'
miRNA:   3'- -CGCACCGGUcUAAUCg--UGC-CUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 35493 0.67 0.962556
Target:  5'- gGCGUGgaGCugacauacgcgcagCAGAUUGGCGCGGucguGCAGUa -3'
miRNA:   3'- -CGCAC--CG--------------GUCUAAUCGUGCC----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 134842 0.67 0.963553
Target:  5'- gGUGgGGCCGGAcaGGUGagccaGGugAGCCg -3'
miRNA:   3'- -CGCaCCGGUCUaaUCGUg----CCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 189619 0.67 0.96973
Target:  5'- uCGgaagGGCCGGu---GUACGGACAuuuauGCCu -3'
miRNA:   3'- cGCa---CCGGUCuaauCGUGCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 125890 0.68 0.946137
Target:  5'- uCGUaGGCCAGA---GCcucaucaucacccagACGGACAGUCa -3'
miRNA:   3'- cGCA-CCGGUCUaauCG---------------UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 89432 0.68 0.935183
Target:  5'- gGCGUaGGCCAGc--AGCGgcUGGAaGGCCa -3'
miRNA:   3'- -CGCA-CCGGUCuaaUCGU--GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 205264 0.68 0.93023
Target:  5'- aGCGaucUGGCUAGccUGGCGCucACGGCCg -3'
miRNA:   3'- -CGC---ACCGGUCuaAUCGUGccUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 170851 0.68 0.93023
Target:  5'- gGCGaGGCCGGc--GGCAgGGACaccgaugucgAGCCg -3'
miRNA:   3'- -CGCaCCGGUCuaaUCGUgCCUG----------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 45566 0.68 0.946137
Target:  5'- gGCGUGGCC-GA--GGCgguacaagcugccguGCaGGCGGCCa -3'
miRNA:   3'- -CGCACCGGuCUaaUCG---------------UGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 29813 0.68 0.935183
Target:  5'- -gGUGGCUGGGagUGGUgGCGG-CAGCCa -3'
miRNA:   3'- cgCACCGGUCUa-AUCG-UGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 84307 0.68 0.943521
Target:  5'- aGCuGUGGCUgcacacggAGCACGGGCuGCUg -3'
miRNA:   3'- -CG-CACCGGucuaa---UCGUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 122806 0.68 0.93023
Target:  5'- uGCGccaGCCAGGUagaagaAGCACcGGCGGCCg -3'
miRNA:   3'- -CGCac-CGGUCUAa-----UCGUGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 37280 0.68 0.93023
Target:  5'- cCGUGGCCGccGAgcAGCccuUGcGACGGCCg -3'
miRNA:   3'- cGCACCGGU--CUaaUCGu--GC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 139672 0.68 0.948672
Target:  5'- aCGUGGCUug--UGGgACGGGC-GCCg -3'
miRNA:   3'- cGCACCGGucuaAUCgUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 128964 0.68 0.948672
Target:  5'- gGCGUcGGCCGuGUUuuugAGCGCGcGCAGCa -3'
miRNA:   3'- -CGCA-CCGGUcUAA----UCGUGCcUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 33815 0.68 0.952324
Target:  5'- gGCGUaGCCgcgacgcGGGUUGGCACaGGccCAGCCc -3'
miRNA:   3'- -CGCAcCGG-------UCUAAUCGUG-CCu-GUCGG- -5'
30235 5' -54.5 NC_006273.1 + 56273 0.68 0.952719
Target:  5'- -gGUGGCUGGucugcUGGgGCGGguACGGCCg -3'
miRNA:   3'- cgCACCGGUCua---AUCgUGCC--UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 94386 0.68 0.954276
Target:  5'- cGUG-GGCCGGGcaccgGGCGCGGcccgcuccggaccuCGGCCg -3'
miRNA:   3'- -CGCaCCGGUCUaa---UCGUGCCu-------------GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.