Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30235 | 5' | -54.5 | NC_006273.1 | + | 129 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 234960 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 235005 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 167708 | 0.71 | 0.853281 |
Target: 5'- aGUGUGGCCuccaguGGUUGGUGCgGGAUGGUg -3' miRNA: 3'- -CGCACCGGu-----CUAAUCGUG-CCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 70982 | 0.71 | 0.860115 |
Target: 5'- cCGUGGU-------GCACGGACAGCCu -3' miRNA: 3'- cGCACCGgucuaauCGUGCCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 42693 | 0.71 | 0.860865 |
Target: 5'- ---aGGCCaacAGAUcugGGCGCaGACAGCCg -3' miRNA: 3'- cgcaCCGG---UCUAa--UCGUGcCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 195022 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 195067 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 174 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 232819 | 0.7 | 0.868251 |
Target: 5'- -gGUGGCUAGGgugAGCACcu-CAGCCu -3' miRNA: 3'- cgCACCGGUCUaa-UCGUGccuGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 72843 | 0.7 | 0.895062 |
Target: 5'- aGCGUucgaaaccagaaaGGCCAuc---GUGCGGACGGCCa -3' miRNA: 3'- -CGCA-------------CCGGUcuaauCGUGCCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 83320 | 0.7 | 0.868251 |
Target: 5'- cGCGUGGuCCGGGUggacccGGCGUGGugGGaCCc -3' miRNA: 3'- -CGCACC-GGUCUAa-----UCGUGCCugUC-GG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 177286 | 0.7 | 0.868251 |
Target: 5'- cGCGUGGUUGGAgcAGCACcaggaGGAgGGCa -3' miRNA: 3'- -CGCACCGGUCUaaUCGUG-----CCUgUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 178531 | 0.7 | 0.875433 |
Target: 5'- cGCGUGGCggCGGcggUGGUAgCGG-CAGCCu -3' miRNA: 3'- -CGCACCG--GUCua-AUCGU-GCCuGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 104845 | 0.7 | 0.889165 |
Target: 5'- aGCGUGGCCAGuccGGCACuu---GCCg -3' miRNA: 3'- -CGCACCGGUCuaaUCGUGccuguCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 152882 | 0.7 | 0.889165 |
Target: 5'- gGCGUagccauuggGGCCGuGggUGGCGCGG-UGGCCu -3' miRNA: 3'- -CGCA---------CCGGU-CuaAUCGUGCCuGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 213708 | 0.7 | 0.895706 |
Target: 5'- -aGUGGCgCAGGUcguGCACGu-CGGCCa -3' miRNA: 3'- cgCACCG-GUCUAau-CGUGCcuGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 216969 | 0.69 | 0.913993 |
Target: 5'- cGCG-GGCCGucUUGGcCACGGccGCAGCg -3' miRNA: 3'- -CGCaCCGGUcuAAUC-GUGCC--UGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 47276 | 0.69 | 0.925047 |
Target: 5'- uGCGUgGGCUGGAacuuGCGCGGcaacACAGCa -3' miRNA: 3'- -CGCA-CCGGUCUaau-CGUGCC----UGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 51624 | 0.69 | 0.919635 |
Target: 5'- gGCGacggcaGGCuCGGc--GGCGCGGACAGCa -3' miRNA: 3'- -CGCa-----CCG-GUCuaaUCGUGCCUGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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