miRNA display CGI


Results 1 - 20 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 220296 1.13 0.003609
Target:  5'- gGCGUGGCCAGAUUAGCACGGACAGCCc -3'
miRNA:   3'- -CGCACCGGUCUAAUCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 72686 0.82 0.30472
Target:  5'- gGCGagcUGGUgGGGUgaAGCACGGGCAGCCg -3'
miRNA:   3'- -CGC---ACCGgUCUAa-UCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 115477 0.81 0.348236
Target:  5'- aGCGUcGGCauauGAagGGCGCGGGCGGCCa -3'
miRNA:   3'- -CGCA-CCGgu--CUaaUCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 202555 0.8 0.371601
Target:  5'- aGCGUGGCCGGcgUGGCGgCcGACGGCa -3'
miRNA:   3'- -CGCACCGGUCuaAUCGU-GcCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 141333 0.8 0.371601
Target:  5'- uGCGUGGCCGcacaccuGUUGGagcaACGGGCGGCCg -3'
miRNA:   3'- -CGCACCGGUc------UAAUCg---UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 95283 0.8 0.396011
Target:  5'- gGUGUGGCCGGA--AGCgcucggggucgACGGugGGCCg -3'
miRNA:   3'- -CGCACCGGUCUaaUCG-----------UGCCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 73373 0.79 0.419706
Target:  5'- aGCG-GGcCCAGAgucgcaaagcGCGCGGGCAGCCa -3'
miRNA:   3'- -CGCaCC-GGUCUaau-------CGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 63760 0.76 0.601024
Target:  5'- cGCGUGGCCGGGc--GCGCcucucggaGGACGGCg -3'
miRNA:   3'- -CGCACCGGUCUaauCGUG--------CCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 144198 0.75 0.651157
Target:  5'- cGCGUGGCCGagcggugcgacGAccGGCACGG-CGGCUc -3'
miRNA:   3'- -CGCACCGGU-----------CUaaUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 196842 0.75 0.661171
Target:  5'- cGCgGUGGCUGGGUU-GCGCGGcGgGGCCg -3'
miRNA:   3'- -CG-CACCGGUCUAAuCGUGCC-UgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 1950 0.75 0.661171
Target:  5'- cGCgGUGGCUGGGUU-GCGCGGcGgGGCCg -3'
miRNA:   3'- -CG-CACCGGUCUAAuCGUGCC-UgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 147560 0.75 0.661171
Target:  5'- gGCGUcGGCgGGAgcAGCGgGGGCGGCg -3'
miRNA:   3'- -CGCA-CCGgUCUaaUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 104354 0.73 0.767998
Target:  5'- cGCGcGGCCAGG-UAGCGCGaGaguuGCAGCg -3'
miRNA:   3'- -CGCaCCGGUCUaAUCGUGC-C----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 143137 0.72 0.777185
Target:  5'- uGUGUGGCCgucuuucaggAGAcgGGCACGG-CGcGCCg -3'
miRNA:   3'- -CGCACCGG----------UCUaaUCGUGCCuGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 124243 0.72 0.786248
Target:  5'- cGCGUGGCaugcuuGGUgucugcgGGCGCGaGAgGGCCg -3'
miRNA:   3'- -CGCACCGgu----CUAa------UCGUGC-CUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 132398 0.72 0.786248
Target:  5'- aGCGUccgacGCCGGGUUGGCACGacGCGGCg -3'
miRNA:   3'- -CGCAc----CGGUCUAAUCGUGCc-UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 151986 0.72 0.795177
Target:  5'- gGCGccgccgGGCCGGG-UGGCgGCGGcaGCAGCCc -3'
miRNA:   3'- -CGCa-----CCGGUCUaAUCG-UGCC--UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 105422 0.72 0.803964
Target:  5'- uGCGUGGCCAcgugguuuucGAgaacgUGGUA-GGACAGCg -3'
miRNA:   3'- -CGCACCGGU----------CUa----AUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 120739 0.72 0.812602
Target:  5'- uGCG-GGCCAgGAUgccGGCcgccaGGGCGGCCa -3'
miRNA:   3'- -CGCaCCGGU-CUAa--UCGug---CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 195067 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.