miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 205264 0.68 0.93023
Target:  5'- aGCGaucUGGCUAGccUGGCGCucACGGCCg -3'
miRNA:   3'- -CGC---ACCGGUCuaAUCGUGccUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 89432 0.68 0.935183
Target:  5'- gGCGUaGGCCAGc--AGCGgcUGGAaGGCCa -3'
miRNA:   3'- -CGCA-CCGGUCuaaUCGU--GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 29813 0.68 0.935183
Target:  5'- -gGUGGCUGGGagUGGUgGCGG-CAGCCa -3'
miRNA:   3'- cgCACCGGUCUa-AUCG-UGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 64835 0.68 0.939906
Target:  5'- cGCGguucGGCCGGAccguGCACGcGcucucGCGGCCu -3'
miRNA:   3'- -CGCa---CCGGUCUaau-CGUGC-C-----UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 184469 0.68 0.939906
Target:  5'- gGUGUGGCUGcGAacggUAGCAgucgcCGGGgAGCCg -3'
miRNA:   3'- -CGCACCGGU-CUa---AUCGU-----GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 30219 0.68 0.939906
Target:  5'- cCGcGGCCAGcgUGGCGaGGACAcuuuccgcGCCc -3'
miRNA:   3'- cGCaCCGGUCuaAUCGUgCCUGU--------CGG- -5'
30235 5' -54.5 NC_006273.1 + 84307 0.68 0.943521
Target:  5'- aGCuGUGGCUgcacacggAGCACGGGCuGCUg -3'
miRNA:   3'- -CG-CACCGGucuaa---UCGUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 24960 0.68 0.944402
Target:  5'- uGCGgcugcuuuugGGCUucuacAGCACGGugGGCCu -3'
miRNA:   3'- -CGCa---------CCGGucuaaUCGUGCCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 161834 0.68 0.944402
Target:  5'- cGCGUcGGCCucuGGAggAGCAC-GugAGUCg -3'
miRNA:   3'- -CGCA-CCGG---UCUaaUCGUGcCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 113512 0.68 0.944402
Target:  5'- gGCGgcgGGuugcCCGGGggGcGCGCGGGCGGCg -3'
miRNA:   3'- -CGCa--CC----GGUCUaaU-CGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 127236 0.68 0.944402
Target:  5'- cGCGccucgauguUGGCCGGGUUcaacGGUugcCGGuCGGCCa -3'
miRNA:   3'- -CGC---------ACCGGUCUAA----UCGu--GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 125890 0.68 0.946137
Target:  5'- uCGUaGGCCAGA---GCcucaucaucacccagACGGACAGUCa -3'
miRNA:   3'- cGCA-CCGGUCUaauCG---------------UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 45566 0.68 0.946137
Target:  5'- gGCGUGGCC-GA--GGCgguacaagcugccguGCaGGCGGCCa -3'
miRNA:   3'- -CGCACCGGuCUaaUCG---------------UGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 64003 0.68 0.948672
Target:  5'- -gGUGGcCCAGAUgagcaaGGCGCucaaaaaGACGGCCu -3'
miRNA:   3'- cgCACC-GGUCUAa-----UCGUGc------CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 164879 0.68 0.948672
Target:  5'- ---gGGCCA---UAGCGCGaGugAGCCg -3'
miRNA:   3'- cgcaCCGGUcuaAUCGUGC-CugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 139672 0.68 0.948672
Target:  5'- aCGUGGCUug--UGGgACGGGC-GCCg -3'
miRNA:   3'- cGCACCGGucuaAUCgUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 128964 0.68 0.948672
Target:  5'- gGCGUcGGCCGuGUUuuugAGCGCGcGCAGCa -3'
miRNA:   3'- -CGCA-CCGGUcUAA----UCGUGCcUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 230550 0.68 0.948672
Target:  5'- cCGUGGCCGGG--AGaagACGGAgGaGCCg -3'
miRNA:   3'- cGCACCGGUCUaaUCg--UGCCUgU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 33815 0.68 0.952324
Target:  5'- gGCGUaGCCgcgacgcGGGUUGGCACaGGccCAGCCc -3'
miRNA:   3'- -CGCAcCGG-------UCUAAUCGUG-CCu-GUCGG- -5'
30235 5' -54.5 NC_006273.1 + 56273 0.68 0.952719
Target:  5'- -gGUGGCUGGucugcUGGgGCGGguACGGCCg -3'
miRNA:   3'- cgCACCGGUCua---AUCgUGCC--UGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.