miRNA display CGI


Results 81 - 100 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 56273 0.68 0.952719
Target:  5'- -gGUGGCUGGucugcUGGgGCGGguACGGCCg -3'
miRNA:   3'- cgCACCGGUCua---AUCgUGCC--UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 94386 0.68 0.954276
Target:  5'- cGUG-GGCCGGGcaccgGGCGCGGcccgcuccggaccuCGGCCg -3'
miRNA:   3'- -CGCaCCGGUCUaa---UCGUGCCu-------------GUCGG- -5'
30235 5' -54.5 NC_006273.1 + 167218 0.67 0.955421
Target:  5'- aGCGUcagcGGCCGGuggUGGCugguaaggucgaucAUGGGCGGCg -3'
miRNA:   3'- -CGCA----CCGGUCua-AUCG--------------UGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 189045 0.67 0.956173
Target:  5'- cGCGUGGugggggcCCGGAccGGCGgCGuaGGCGGCCg -3'
miRNA:   3'- -CGCACC-------GGUCUaaUCGU-GC--CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 119595 0.67 0.956546
Target:  5'- cGC-UGGUCGGcg-GGUGCGGugAGUCg -3'
miRNA:   3'- -CGcACCGGUCuaaUCGUGCCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 102290 0.67 0.956546
Target:  5'- cGCGUGGCgGcGGUgacaggGGCaacGCGGGCAgGUCg -3'
miRNA:   3'- -CGCACCGgU-CUAa-----UCG---UGCCUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 61250 0.67 0.956546
Target:  5'- uGCG-GGcCCAGGUccagccacugcAGCGCGGcgcgcGCGGCCg -3'
miRNA:   3'- -CGCaCC-GGUCUAa----------UCGUGCC-----UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 163188 0.67 0.956546
Target:  5'- -gGUGGCCGuGGUcugucggcAGUGCGGACAcuGCCu -3'
miRNA:   3'- cgCACCGGU-CUAa-------UCGUGCCUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 183397 0.67 0.960156
Target:  5'- aGCaUGGCgCAGuucUGGCACGGu--GCCa -3'
miRNA:   3'- -CGcACCG-GUCua-AUCGUGCCuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 19408 0.67 0.960156
Target:  5'- ---aGGCCuGGUUacAGCGCGGcCGGCg -3'
miRNA:   3'- cgcaCCGGuCUAA--UCGUGCCuGUCGg -5'
30235 5' -54.5 NC_006273.1 + 221782 0.67 0.960156
Target:  5'- gGCGUGgGgCGGcccuccAGCACGG-CGGCCc -3'
miRNA:   3'- -CGCAC-CgGUCuaa---UCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 232179 0.67 0.960156
Target:  5'- uGCGUGGCUAcAUUAGaaaACGuGACGcGUCg -3'
miRNA:   3'- -CGCACCGGUcUAAUCg--UGC-CUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 35493 0.67 0.962556
Target:  5'- gGCGUGgaGCugacauacgcgcagCAGAUUGGCGCGGucguGCAGUa -3'
miRNA:   3'- -CGCAC--CG--------------GUCUAAUCGUGCC----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 7877 0.67 0.963553
Target:  5'- aCGUGGCguGAcgaagcUGGUACGGugGCGGCg -3'
miRNA:   3'- cGCACCGguCUa-----AUCGUGCC--UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 134842 0.67 0.963553
Target:  5'- gGUGgGGCCGGAcaGGUGagccaGGugAGCCg -3'
miRNA:   3'- -CGCaCCGGUCUaaUCGUg----CCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156350 0.67 0.963553
Target:  5'- cGCGUGGgcCCAGccUGGCgcacuACGuGACGGCUu -3'
miRNA:   3'- -CGCACC--GGUCuaAUCG-----UGC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 140646 0.67 0.963553
Target:  5'- gGCG-GGCCGGGaaggggAGCugGGugGGg- -3'
miRNA:   3'- -CGCaCCGGUCUaa----UCGugCCugUCgg -5'
30235 5' -54.5 NC_006273.1 + 156278 0.67 0.963553
Target:  5'- cGCG-GGUCAucuacggGGaCACGGACAGCg -3'
miRNA:   3'- -CGCaCCGGUcuaa---UC-GUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 61571 0.67 0.963553
Target:  5'- uCGUcGGCCGGGUc-GCGCGGccguuUGGCCa -3'
miRNA:   3'- cGCA-CCGGUCUAauCGUGCCu----GUCGG- -5'
30235 5' -54.5 NC_006273.1 + 111329 0.67 0.963553
Target:  5'- gGCcUGGCCGca-UAGCGCGGcCGcGCCg -3'
miRNA:   3'- -CGcACCGGUcuaAUCGUGCCuGU-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.