miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 61571 0.67 0.963553
Target:  5'- uCGUcGGCCGGGUc-GCGCGGccguuUGGCCa -3'
miRNA:   3'- cGCA-CCGGUCUAauCGUGCCu----GUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156278 0.67 0.963553
Target:  5'- cGCG-GGUCAucuacggGGaCACGGACAGCg -3'
miRNA:   3'- -CGCaCCGGUcuaa---UC-GUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 208567 0.67 0.966743
Target:  5'- -gGUGGCgAug-UAGCGCcgucuuggaaaaGGACGGCCa -3'
miRNA:   3'- cgCACCGgUcuaAUCGUG------------CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 176288 0.67 0.966743
Target:  5'- cCGUGcGCguGAgcAGCGCuacucgcuguuuGGGCGGCCu -3'
miRNA:   3'- cGCAC-CGguCUaaUCGUG------------CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 86809 0.67 0.966743
Target:  5'- aGUGUGGCCAGAcUGacGUgaaACGGACGuuGUCc -3'
miRNA:   3'- -CGCACCGGUCUaAU--CG---UGCCUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 189619 0.67 0.96973
Target:  5'- uCGgaagGGCCGGu---GUACGGACAuuuauGCCu -3'
miRNA:   3'- cGCa---CCGGUCuaauCGUGCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 156502 0.67 0.96973
Target:  5'- gGCGUGGaUCuGGUgcGCAa-GACGGCCu -3'
miRNA:   3'- -CGCACC-GGuCUAauCGUgcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 106232 0.66 0.972521
Target:  5'- cGgGUGGCCAGc--GGCGcCGGuuuGCCu -3'
miRNA:   3'- -CgCACCGGUCuaaUCGU-GCCuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 94840 0.66 0.972521
Target:  5'- gGUG-GGCCGGGUggacggUGGUggGGACGGgCg -3'
miRNA:   3'- -CGCaCCGGUCUA------AUCGugCCUGUCgG- -5'
30235 5' -54.5 NC_006273.1 + 226553 0.66 0.972521
Target:  5'- aGCGUGGCCAcGAacgAGCcCGcGCcccaGGCCg -3'
miRNA:   3'- -CGCACCGGU-CUaa-UCGuGCcUG----UCGG- -5'
30235 5' -54.5 NC_006273.1 + 21886 0.66 0.972521
Target:  5'- uGCGUGcccuucaucaGCCAGAgcauCGCGGacaacaacuGCAGCCg -3'
miRNA:   3'- -CGCAC----------CGGUCUaaucGUGCC---------UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 175663 0.66 0.972521
Target:  5'- cGCGUuuuguggaauuGGCCGGuu--GCugGGGCuuguacgcGGCCa -3'
miRNA:   3'- -CGCA-----------CCGGUCuaauCGugCCUG--------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 9447 0.66 0.972521
Target:  5'- aCGUGuccacaaacagcGUCAGG-UGGUACGG-CAGCCa -3'
miRNA:   3'- cGCAC------------CGGUCUaAUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 14008 0.66 0.972521
Target:  5'- gGCG-GGCgCGGggUGGCggaGCGGGgAGCg -3'
miRNA:   3'- -CGCaCCG-GUCuaAUCG---UGCCUgUCGg -5'
30235 5' -54.5 NC_006273.1 + 232232 0.66 0.972521
Target:  5'- aGCGgGGUCGGGguagGGUACGGugGGa- -3'
miRNA:   3'- -CGCaCCGGUCUaa--UCGUGCCugUCgg -5'
30235 5' -54.5 NC_006273.1 + 185548 0.66 0.975121
Target:  5'- uCGUGGCUguGGcgUAGCGCGuuuuguACAGCg -3'
miRNA:   3'- cGCACCGG--UCuaAUCGUGCc-----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 40654 0.66 0.975121
Target:  5'- --uUGGCCGGGgacggagaggcUgacgaaAGCAUGGACAGCg -3'
miRNA:   3'- cgcACCGGUCU-----------Aa-----UCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 126770 0.66 0.975121
Target:  5'- cGCGUGGuCCAGA--GGCGCGcGCAcuucgaGCa -3'
miRNA:   3'- -CGCACC-GGUCUaaUCGUGCcUGU------CGg -5'
30235 5' -54.5 NC_006273.1 + 222827 0.66 0.975121
Target:  5'- gGCcUGGCCgcAGAgcAGCaACGGACGcGUCa -3'
miRNA:   3'- -CGcACCGG--UCUaaUCG-UGCCUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 33387 0.66 0.975121
Target:  5'- aGCGaGuGCCAGAguaGGCGCuGGACGcgcaccGCCu -3'
miRNA:   3'- -CGCaC-CGGUCUaa-UCGUG-CCUGU------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.