miRNA display CGI


Results 41 - 60 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 14008 0.66 0.972521
Target:  5'- gGCG-GGCgCGGggUGGCggaGCGGGgAGCg -3'
miRNA:   3'- -CGCaCCG-GUCuaAUCG---UGCCUgUCGg -5'
30235 5' -54.5 NC_006273.1 + 189619 0.67 0.96973
Target:  5'- uCGgaagGGCCGGu---GUACGGACAuuuauGCCu -3'
miRNA:   3'- cGCa---CCGGUCuaauCGUGCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 156502 0.67 0.96973
Target:  5'- gGCGUGGaUCuGGUgcGCAa-GACGGCCu -3'
miRNA:   3'- -CGCACC-GGuCUAauCGUgcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 208567 0.67 0.966743
Target:  5'- -gGUGGCgAug-UAGCGCcgucuuggaaaaGGACGGCCa -3'
miRNA:   3'- cgCACCGgUcuaAUCGUG------------CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 176288 0.67 0.966743
Target:  5'- cCGUGcGCguGAgcAGCGCuacucgcuguuuGGGCGGCCu -3'
miRNA:   3'- cGCAC-CGguCUaaUCGUG------------CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 86809 0.67 0.966743
Target:  5'- aGUGUGGCCAGAcUGacGUgaaACGGACGuuGUCc -3'
miRNA:   3'- -CGCACCGGUCUaAU--CG---UGCCUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 134842 0.67 0.963553
Target:  5'- gGUGgGGCCGGAcaGGUGagccaGGugAGCCg -3'
miRNA:   3'- -CGCaCCGGUCUaaUCGUg----CCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 61571 0.67 0.963553
Target:  5'- uCGUcGGCCGGGUc-GCGCGGccguuUGGCCa -3'
miRNA:   3'- cGCA-CCGGUCUAauCGUGCCu----GUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156350 0.67 0.963553
Target:  5'- cGCGUGGgcCCAGccUGGCgcacuACGuGACGGCUu -3'
miRNA:   3'- -CGCACC--GGUCuaAUCG-----UGC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156278 0.67 0.963553
Target:  5'- cGCG-GGUCAucuacggGGaCACGGACAGCg -3'
miRNA:   3'- -CGCaCCGGUcuaa---UC-GUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 101158 0.67 0.963553
Target:  5'- cGCaaGGCCucg--GGCACGGGCguggcGGCCg -3'
miRNA:   3'- -CGcaCCGGucuaaUCGUGCCUG-----UCGG- -5'
30235 5' -54.5 NC_006273.1 + 104509 0.67 0.963553
Target:  5'- cGCGaucggcGGCCGGGUc-GCGCGGcagugACAGCUu -3'
miRNA:   3'- -CGCa-----CCGGUCUAauCGUGCC-----UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 7877 0.67 0.963553
Target:  5'- aCGUGGCguGAcgaagcUGGUACGGugGCGGCg -3'
miRNA:   3'- cGCACCGguCUa-----AUCGUGCC--UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 111329 0.67 0.963553
Target:  5'- gGCcUGGCCGca-UAGCGCGGcCGcGCCg -3'
miRNA:   3'- -CGcACCGGUcuaAUCGUGCCuGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 140646 0.67 0.963553
Target:  5'- gGCG-GGCCGGGaaggggAGCugGGugGGg- -3'
miRNA:   3'- -CGCaCCGGUCUaa----UCGugCCugUCgg -5'
30235 5' -54.5 NC_006273.1 + 35493 0.67 0.962556
Target:  5'- gGCGUGgaGCugacauacgcgcagCAGAUUGGCGCGGucguGCAGUa -3'
miRNA:   3'- -CGCAC--CG--------------GUCUAAUCGUGCC----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 19408 0.67 0.960156
Target:  5'- ---aGGCCuGGUUacAGCGCGGcCGGCg -3'
miRNA:   3'- cgcaCCGGuCUAA--UCGUGCCuGUCGg -5'
30235 5' -54.5 NC_006273.1 + 183397 0.67 0.960156
Target:  5'- aGCaUGGCgCAGuucUGGCACGGu--GCCa -3'
miRNA:   3'- -CGcACCG-GUCua-AUCGUGCCuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 221782 0.67 0.960156
Target:  5'- gGCGUGgGgCGGcccuccAGCACGG-CGGCCc -3'
miRNA:   3'- -CGCAC-CgGUCuaa---UCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 232179 0.67 0.960156
Target:  5'- uGCGUGGCUAcAUUAGaaaACGuGACGcGUCg -3'
miRNA:   3'- -CGCACCGGUcUAAUCg--UGC-CUGU-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.