Results 61 - 80 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30235 | 5' | -54.5 | NC_006273.1 | + | 163188 | 0.67 | 0.956546 |
Target: 5'- -gGUGGCCGuGGUcugucggcAGUGCGGACAcuGCCu -3' miRNA: 3'- cgCACCGGU-CUAa-------UCGUGCCUGU--CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 61250 | 0.67 | 0.956546 |
Target: 5'- uGCG-GGcCCAGGUccagccacugcAGCGCGGcgcgcGCGGCCg -3' miRNA: 3'- -CGCaCC-GGUCUAa----------UCGUGCC-----UGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 102290 | 0.67 | 0.956546 |
Target: 5'- cGCGUGGCgGcGGUgacaggGGCaacGCGGGCAgGUCg -3' miRNA: 3'- -CGCACCGgU-CUAa-----UCG---UGCCUGU-CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 119595 | 0.67 | 0.956546 |
Target: 5'- cGC-UGGUCGGcg-GGUGCGGugAGUCg -3' miRNA: 3'- -CGcACCGGUCuaaUCGUGCCugUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 189045 | 0.67 | 0.956173 |
Target: 5'- cGCGUGGugggggcCCGGAccGGCGgCGuaGGCGGCCg -3' miRNA: 3'- -CGCACC-------GGUCUaaUCGU-GC--CUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 167218 | 0.67 | 0.955421 |
Target: 5'- aGCGUcagcGGCCGGuggUGGCugguaaggucgaucAUGGGCGGCg -3' miRNA: 3'- -CGCA----CCGGUCua-AUCG--------------UGCCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 94386 | 0.68 | 0.954276 |
Target: 5'- cGUG-GGCCGGGcaccgGGCGCGGcccgcuccggaccuCGGCCg -3' miRNA: 3'- -CGCaCCGGUCUaa---UCGUGCCu-------------GUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 56273 | 0.68 | 0.952719 |
Target: 5'- -gGUGGCUGGucugcUGGgGCGGguACGGCCg -3' miRNA: 3'- cgCACCGGUCua---AUCgUGCC--UGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 141167 | 0.68 | 0.952719 |
Target: 5'- cGCGgacUGcGCCGGGg-GGCgGCGGGCAcGCCg -3' miRNA: 3'- -CGC---AC-CGGUCUaaUCG-UGCCUGU-CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 33815 | 0.68 | 0.952324 |
Target: 5'- gGCGUaGCCgcgacgcGGGUUGGCACaGGccCAGCCc -3' miRNA: 3'- -CGCAcCGG-------UCUAAUCGUG-CCu-GUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 64003 | 0.68 | 0.948672 |
Target: 5'- -gGUGGcCCAGAUgagcaaGGCGCucaaaaaGACGGCCu -3' miRNA: 3'- cgCACC-GGUCUAa-----UCGUGc------CUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 230550 | 0.68 | 0.948672 |
Target: 5'- cCGUGGCCGGG--AGaagACGGAgGaGCCg -3' miRNA: 3'- cGCACCGGUCUaaUCg--UGCCUgU-CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 128964 | 0.68 | 0.948672 |
Target: 5'- gGCGUcGGCCGuGUUuuugAGCGCGcGCAGCa -3' miRNA: 3'- -CGCA-CCGGUcUAA----UCGUGCcUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 164879 | 0.68 | 0.948672 |
Target: 5'- ---gGGCCA---UAGCGCGaGugAGCCg -3' miRNA: 3'- cgcaCCGGUcuaAUCGUGC-CugUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 139672 | 0.68 | 0.948672 |
Target: 5'- aCGUGGCUug--UGGgACGGGC-GCCg -3' miRNA: 3'- cGCACCGGucuaAUCgUGCCUGuCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 125890 | 0.68 | 0.946137 |
Target: 5'- uCGUaGGCCAGA---GCcucaucaucacccagACGGACAGUCa -3' miRNA: 3'- cGCA-CCGGUCUaauCG---------------UGCCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 45566 | 0.68 | 0.946137 |
Target: 5'- gGCGUGGCC-GA--GGCgguacaagcugccguGCaGGCGGCCa -3' miRNA: 3'- -CGCACCGGuCUaaUCG---------------UGcCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 24960 | 0.68 | 0.944402 |
Target: 5'- uGCGgcugcuuuugGGCUucuacAGCACGGugGGCCu -3' miRNA: 3'- -CGCa---------CCGGucuaaUCGUGCCugUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 113512 | 0.68 | 0.944402 |
Target: 5'- gGCGgcgGGuugcCCGGGggGcGCGCGGGCGGCg -3' miRNA: 3'- -CGCa--CC----GGUCUaaU-CGUGCCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 127236 | 0.68 | 0.944402 |
Target: 5'- cGCGccucgauguUGGCCGGGUUcaacGGUugcCGGuCGGCCa -3' miRNA: 3'- -CGC---------ACCGGUCUAA----UCGu--GCCuGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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