miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 127236 0.68 0.944402
Target:  5'- cGCGccucgauguUGGCCGGGUUcaacGGUugcCGGuCGGCCa -3'
miRNA:   3'- -CGC---------ACCGGUCUAA----UCGu--GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 84307 0.68 0.943521
Target:  5'- aGCuGUGGCUgcacacggAGCACGGGCuGCUg -3'
miRNA:   3'- -CG-CACCGGucuaa---UCGUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 64835 0.68 0.939906
Target:  5'- cGCGguucGGCCGGAccguGCACGcGcucucGCGGCCu -3'
miRNA:   3'- -CGCa---CCGGUCUaau-CGUGC-C-----UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 30219 0.68 0.939906
Target:  5'- cCGcGGCCAGcgUGGCGaGGACAcuuuccgcGCCc -3'
miRNA:   3'- cGCaCCGGUCuaAUCGUgCCUGU--------CGG- -5'
30235 5' -54.5 NC_006273.1 + 184469 0.68 0.939906
Target:  5'- gGUGUGGCUGcGAacggUAGCAgucgcCGGGgAGCCg -3'
miRNA:   3'- -CGCACCGGU-CUa---AUCGU-----GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 29813 0.68 0.935183
Target:  5'- -gGUGGCUGGGagUGGUgGCGG-CAGCCa -3'
miRNA:   3'- cgCACCGGUCUa-AUCG-UGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 89432 0.68 0.935183
Target:  5'- gGCGUaGGCCAGc--AGCGgcUGGAaGGCCa -3'
miRNA:   3'- -CGCA-CCGGUCuaaUCGU--GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 37280 0.68 0.93023
Target:  5'- cCGUGGCCGccGAgcAGCccuUGcGACGGCCg -3'
miRNA:   3'- cGCACCGGU--CUaaUCGu--GC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 171156 0.68 0.93023
Target:  5'- cGCG-GGCCAGGUcaucggcgcUAGCGCGcGAU-GUCg -3'
miRNA:   3'- -CGCaCCGGUCUA---------AUCGUGC-CUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 119157 0.68 0.93023
Target:  5'- aGCGaga--AGAUgucGCGCGGACAGCCg -3'
miRNA:   3'- -CGCaccggUCUAau-CGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 170851 0.68 0.93023
Target:  5'- gGCGaGGCCGGc--GGCAgGGACaccgaugucgAGCCg -3'
miRNA:   3'- -CGCaCCGGUCuaaUCGUgCCUG----------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 122806 0.68 0.93023
Target:  5'- uGCGccaGCCAGGUagaagaAGCACcGGCGGCCg -3'
miRNA:   3'- -CGCac-CGGUCUAa-----UCGUGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 205264 0.68 0.93023
Target:  5'- aGCGaucUGGCUAGccUGGCGCucACGGCCg -3'
miRNA:   3'- -CGC---ACCGGUCuaAUCGUGccUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 188437 0.69 0.925047
Target:  5'- uGgGUGGaacagCAGGUUguagguggugaGGCGCGGAUAGCg -3'
miRNA:   3'- -CgCACCg----GUCUAA-----------UCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 78673 0.69 0.925047
Target:  5'- cGCGagaaggGGCCGGGguc-CGCGGGCAccGCCg -3'
miRNA:   3'- -CGCa-----CCGGUCUaaucGUGCCUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 86792 0.69 0.925047
Target:  5'- cCGUGGaCCgcguAGAcgGGCACGGGCGGg- -3'
miRNA:   3'- cGCACC-GG----UCUaaUCGUGCCUGUCgg -5'
30235 5' -54.5 NC_006273.1 + 95519 0.69 0.925047
Target:  5'- ---cGGCCGGAgacuGCGCcGACAGCUc -3'
miRNA:   3'- cgcaCCGGUCUaau-CGUGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 47276 0.69 0.925047
Target:  5'- uGCGUgGGCUGGAacuuGCGCGGcaacACAGCa -3'
miRNA:   3'- -CGCA-CCGGUCUaau-CGUGCC----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 196708 0.69 0.919635
Target:  5'- cGCGUGGCaGGAgcUGGCGCaGuACgAGCCg -3'
miRNA:   3'- -CGCACCGgUCUa-AUCGUGcC-UG-UCGG- -5'
30235 5' -54.5 NC_006273.1 + 51624 0.69 0.919635
Target:  5'- gGCGacggcaGGCuCGGc--GGCGCGGACAGCa -3'
miRNA:   3'- -CGCa-----CCG-GUCuaaUCGUGCCUGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.