miRNA display CGI


Results 41 - 60 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 61571 0.67 0.963553
Target:  5'- uCGUcGGCCGGGUc-GCGCGGccguuUGGCCa -3'
miRNA:   3'- cGCA-CCGGUCUAauCGUGCCu----GUCGG- -5'
30235 5' -54.5 NC_006273.1 + 61701 0.66 0.975121
Target:  5'- cCGUGaGCCaauuggAGAUcGGCGCGGugGauGCCc -3'
miRNA:   3'- cGCAC-CGG------UCUAaUCGUGCCugU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 63760 0.76 0.601024
Target:  5'- cGCGUGGCCGGGc--GCGCcucucggaGGACGGCg -3'
miRNA:   3'- -CGCACCGGUCUaauCGUG--------CCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 64003 0.68 0.948672
Target:  5'- -gGUGGcCCAGAUgagcaaGGCGCucaaaaaGACGGCCu -3'
miRNA:   3'- cgCACC-GGUCUAa-----UCGUGc------CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 64234 0.66 0.981844
Target:  5'- aGCGccgaugaccUGGCCcGcg-GGCACGGGCguugcggcggcGGCCg -3'
miRNA:   3'- -CGC---------ACCGGuCuaaUCGUGCCUG-----------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 64835 0.68 0.939906
Target:  5'- cGCGguucGGCCGGAccguGCACGcGcucucGCGGCCu -3'
miRNA:   3'- -CGCa---CCGGUCUaau-CGUGC-C-----UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 68067 0.66 0.982432
Target:  5'- cCGUGGCCGccgcugccgccgcugUGGC-CGGAguGCCc -3'
miRNA:   3'- cGCACCGGUcua------------AUCGuGCCUguCGG- -5'
30235 5' -54.5 NC_006273.1 + 70982 0.71 0.860115
Target:  5'- cCGUGGU-------GCACGGACAGCCu -3'
miRNA:   3'- cGCACCGgucuaauCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 72686 0.82 0.30472
Target:  5'- gGCGagcUGGUgGGGUgaAGCACGGGCAGCCg -3'
miRNA:   3'- -CGC---ACCGgUCUAa-UCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 72843 0.7 0.895062
Target:  5'- aGCGUucgaaaccagaaaGGCCAuc---GUGCGGACGGCCa -3'
miRNA:   3'- -CGCA-------------CCGGUcuaauCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 73373 0.79 0.419706
Target:  5'- aGCG-GGcCCAGAgucgcaaagcGCGCGGGCAGCCa -3'
miRNA:   3'- -CGCaCC-GGUCUaau-------CGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 76622 0.66 0.975121
Target:  5'- cCGUGGCCGc---GGC-CGG-CGGCCu -3'
miRNA:   3'- cGCACCGGUcuaaUCGuGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 78673 0.69 0.925047
Target:  5'- cGCGagaaggGGCCGGGguc-CGCGGGCAccGCCg -3'
miRNA:   3'- -CGCa-----CCGGUCUaaucGUGCCUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 81133 0.66 0.975121
Target:  5'- gGCGUacgaggGGUugCGGAUggAGCugGG-CGGCCg -3'
miRNA:   3'- -CGCA------CCG--GUCUAa-UCGugCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 83320 0.7 0.868251
Target:  5'- cGCGUGGuCCGGGUggacccGGCGUGGugGGaCCc -3'
miRNA:   3'- -CGCACC-GGUCUAa-----UCGUGCCugUC-GG- -5'
30235 5' -54.5 NC_006273.1 + 84307 0.68 0.943521
Target:  5'- aGCuGUGGCUgcacacggAGCACGGGCuGCUg -3'
miRNA:   3'- -CG-CACCGGucuaa---UCGUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 86595 0.66 0.981844
Target:  5'- cCGUGGCauuGAgacGCACGGcGCcGCCg -3'
miRNA:   3'- cGCACCGgu-CUaauCGUGCC-UGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 86792 0.69 0.925047
Target:  5'- cCGUGGaCCgcguAGAcgGGCACGGGCGGg- -3'
miRNA:   3'- cGCACC-GG----UCUaaUCGUGCCUGUCgg -5'
30235 5' -54.5 NC_006273.1 + 86809 0.67 0.966743
Target:  5'- aGUGUGGCCAGAcUGacGUgaaACGGACGuuGUCc -3'
miRNA:   3'- -CGCACCGGUCUaAU--CG---UGCCUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 89432 0.68 0.935183
Target:  5'- gGCGUaGGCCAGc--AGCGgcUGGAaGGCCa -3'
miRNA:   3'- -CGCA-CCGGUCuaaUCGU--GCCUgUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.