Results 61 - 80 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30235 | 5' | -54.5 | NC_006273.1 | + | 94386 | 0.68 | 0.954276 |
Target: 5'- cGUG-GGCCGGGcaccgGGCGCGGcccgcuccggaccuCGGCCg -3' miRNA: 3'- -CGCaCCGGUCUaa---UCGUGCCu-------------GUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 94840 | 0.66 | 0.972521 |
Target: 5'- gGUG-GGCCGGGUggacggUGGUggGGACGGgCg -3' miRNA: 3'- -CGCaCCGGUCUA------AUCGugCCUGUCgG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 95283 | 0.8 | 0.396011 |
Target: 5'- gGUGUGGCCGGA--AGCgcucggggucgACGGugGGCCg -3' miRNA: 3'- -CGCACCGGUCUaaUCG-----------UGCCugUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 95519 | 0.69 | 0.925047 |
Target: 5'- ---cGGCCGGAgacuGCGCcGACAGCUc -3' miRNA: 3'- cgcaCCGGUCUaau-CGUGcCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 101158 | 0.67 | 0.963553 |
Target: 5'- cGCaaGGCCucg--GGCACGGGCguggcGGCCg -3' miRNA: 3'- -CGcaCCGGucuaaUCGUGCCUG-----UCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 102290 | 0.67 | 0.956546 |
Target: 5'- cGCGUGGCgGcGGUgacaggGGCaacGCGGGCAgGUCg -3' miRNA: 3'- -CGCACCGgU-CUAa-----UCG---UGCCUGU-CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 104354 | 0.73 | 0.767998 |
Target: 5'- cGCGcGGCCAGG-UAGCGCGaGaguuGCAGCg -3' miRNA: 3'- -CGCaCCGGUCUaAUCGUGC-C----UGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 104509 | 0.67 | 0.963553 |
Target: 5'- cGCGaucggcGGCCGGGUc-GCGCGGcagugACAGCUu -3' miRNA: 3'- -CGCa-----CCGGUCUAauCGUGCC-----UGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 104845 | 0.7 | 0.889165 |
Target: 5'- aGCGUGGCCAGuccGGCACuu---GCCg -3' miRNA: 3'- -CGCACCGGUCuaaUCGUGccuguCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 105422 | 0.72 | 0.803964 |
Target: 5'- uGCGUGGCCAcgugguuuucGAgaacgUGGUA-GGACAGCg -3' miRNA: 3'- -CGCACCGGU----------CUa----AUCGUgCCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 106232 | 0.66 | 0.972521 |
Target: 5'- cGgGUGGCCAGc--GGCGcCGGuuuGCCu -3' miRNA: 3'- -CgCACCGGUCuaaUCGU-GCCuguCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 111329 | 0.67 | 0.963553 |
Target: 5'- gGCcUGGCCGca-UAGCGCGGcCGcGCCg -3' miRNA: 3'- -CGcACCGGUcuaAUCGUGCCuGU-CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 113512 | 0.68 | 0.944402 |
Target: 5'- gGCGgcgGGuugcCCGGGggGcGCGCGGGCGGCg -3' miRNA: 3'- -CGCa--CC----GGUCUaaU-CGUGCCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 115477 | 0.81 | 0.348236 |
Target: 5'- aGCGUcGGCauauGAagGGCGCGGGCGGCCa -3' miRNA: 3'- -CGCA-CCGgu--CUaaUCGUGCCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 119157 | 0.68 | 0.93023 |
Target: 5'- aGCGaga--AGAUgucGCGCGGACAGCCg -3' miRNA: 3'- -CGCaccggUCUAau-CGUGCCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 119595 | 0.67 | 0.956546 |
Target: 5'- cGC-UGGUCGGcg-GGUGCGGugAGUCg -3' miRNA: 3'- -CGcACCGGUCuaaUCGUGCCugUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 120739 | 0.72 | 0.812602 |
Target: 5'- uGCG-GGCCAgGAUgccGGCcgccaGGGCGGCCa -3' miRNA: 3'- -CGCaCCGGU-CUAa--UCGug---CCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 122806 | 0.68 | 0.93023 |
Target: 5'- uGCGccaGCCAGGUagaagaAGCACcGGCGGCCg -3' miRNA: 3'- -CGCac-CGGUCUAa-----UCGUGcCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 124243 | 0.72 | 0.786248 |
Target: 5'- cGCGUGGCaugcuuGGUgucugcgGGCGCGaGAgGGCCg -3' miRNA: 3'- -CGCACCGgu----CUAa------UCGUGC-CUgUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 125890 | 0.68 | 0.946137 |
Target: 5'- uCGUaGGCCAGA---GCcucaucaucacccagACGGACAGUCa -3' miRNA: 3'- cGCA-CCGGUCUaauCG---------------UGCCUGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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