miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 126770 0.66 0.975121
Target:  5'- cGCGUGGuCCAGA--GGCGCGcGCAcuucgaGCa -3'
miRNA:   3'- -CGCACC-GGUCUaaUCGUGCcUGU------CGg -5'
30235 5' -54.5 NC_006273.1 + 127236 0.68 0.944402
Target:  5'- cGCGccucgauguUGGCCGGGUUcaacGGUugcCGGuCGGCCa -3'
miRNA:   3'- -CGC---------ACCGGUCUAA----UCGu--GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 128964 0.68 0.948672
Target:  5'- gGCGUcGGCCGuGUUuuugAGCGCGcGCAGCa -3'
miRNA:   3'- -CGCA-CCGGUcUAA----UCGUGCcUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 132398 0.72 0.786248
Target:  5'- aGCGUccgacGCCGGGUUGGCACGacGCGGCg -3'
miRNA:   3'- -CGCAc----CGGUCUAAUCGUGCc-UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 133418 0.71 0.860865
Target:  5'- uGCGUGGCCGuca-AGCgACGcGACGGCg -3'
miRNA:   3'- -CGCACCGGUcuaaUCG-UGC-CUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 133479 0.66 0.979776
Target:  5'- gGCGUgcaGGCgCGGAc--GCugGcGGCGGCCc -3'
miRNA:   3'- -CGCA---CCG-GUCUaauCGugC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 134842 0.67 0.963553
Target:  5'- gGUGgGGCCGGAcaGGUGagccaGGugAGCCg -3'
miRNA:   3'- -CGCaCCGGUCUaaUCGUg----CCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 139672 0.68 0.948672
Target:  5'- aCGUGGCUug--UGGgACGGGC-GCCg -3'
miRNA:   3'- cGCACCGGucuaAUCgUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 140646 0.67 0.963553
Target:  5'- gGCG-GGCCGGGaaggggAGCugGGugGGg- -3'
miRNA:   3'- -CGCaCCGGUCUaa----UCGugCCugUCgg -5'
30235 5' -54.5 NC_006273.1 + 141167 0.68 0.952719
Target:  5'- cGCGgacUGcGCCGGGg-GGCgGCGGGCAcGCCg -3'
miRNA:   3'- -CGC---AC-CGGUCUaaUCG-UGCCUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 141333 0.8 0.371601
Target:  5'- uGCGUGGCCGcacaccuGUUGGagcaACGGGCGGCCg -3'
miRNA:   3'- -CGCACCGGUc------UAAUCg---UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 143137 0.72 0.777185
Target:  5'- uGUGUGGCCgucuuucaggAGAcgGGCACGG-CGcGCCg -3'
miRNA:   3'- -CGCACCGG----------UCUaaUCGUGCCuGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 144198 0.75 0.651157
Target:  5'- cGCGUGGCCGagcggugcgacGAccGGCACGG-CGGCUc -3'
miRNA:   3'- -CGCACCGGU-----------CUaaUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 146494 0.66 0.981844
Target:  5'- gGCuGUGGCCAGcgccUGGUACuuGACAcuGCCg -3'
miRNA:   3'- -CG-CACCGGUCua--AUCGUGc-CUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 147560 0.75 0.661171
Target:  5'- gGCGUcGGCgGGAgcAGCGgGGGCGGCg -3'
miRNA:   3'- -CGCA-CCGgUCUaaUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 151986 0.72 0.795177
Target:  5'- gGCGccgccgGGCCGGG-UGGCgGCGGcaGCAGCCc -3'
miRNA:   3'- -CGCa-----CCGGUCUaAUCG-UGCC--UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 152882 0.7 0.889165
Target:  5'- gGCGUagccauuggGGCCGuGggUGGCGCGG-UGGCCu -3'
miRNA:   3'- -CGCA---------CCGGU-CuaAUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 153620 0.66 0.977537
Target:  5'- cGgGUGGCCGGcgUcAGCGuucGCAGCCc -3'
miRNA:   3'- -CgCACCGGUCuaA-UCGUgccUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 155805 0.66 0.977537
Target:  5'- aCGUGGCCAuGUcgcgAGuCACGGACcccgAGCa -3'
miRNA:   3'- cGCACCGGUcUAa---UC-GUGCCUG----UCGg -5'
30235 5' -54.5 NC_006273.1 + 156278 0.67 0.963553
Target:  5'- cGCG-GGUCAucuacggGGaCACGGACAGCg -3'
miRNA:   3'- -CGCaCCGGUcuaa---UC-GUGCCUGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.