miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 196808 0.66 0.977537
Target:  5'- uGCGgcUGGCUGGcgcugGGCGCGGuGCuGCCc -3'
miRNA:   3'- -CGC--ACCGGUCuaa--UCGUGCC-UGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 196708 0.69 0.919635
Target:  5'- cGCGUGGCaGGAgcUGGCGCaGuACgAGCCg -3'
miRNA:   3'- -CGCACCGgUCUa-AUCGUGcC-UG-UCGG- -5'
30235 5' -54.5 NC_006273.1 + 196118 0.69 0.902026
Target:  5'- gGCGUuucuGGCCAac--AGCACGGGCcgcGCCa -3'
miRNA:   3'- -CGCA----CCGGUcuaaUCGUGCCUGu--CGG- -5'
30235 5' -54.5 NC_006273.1 + 195067 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 195022 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 189619 0.67 0.96973
Target:  5'- uCGgaagGGCCGGu---GUACGGACAuuuauGCCu -3'
miRNA:   3'- cGCa---CCGGUCuaauCGUGCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 189045 0.67 0.956173
Target:  5'- cGCGUGGugggggcCCGGAccGGCGgCGuaGGCGGCCg -3'
miRNA:   3'- -CGCACC-------GGUCUaaUCGU-GC--CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 188437 0.69 0.925047
Target:  5'- uGgGUGGaacagCAGGUUguagguggugaGGCGCGGAUAGCg -3'
miRNA:   3'- -CgCACCg----GUCUAA-----------UCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 185548 0.66 0.975121
Target:  5'- uCGUGGCUguGGcgUAGCGCGuuuuguACAGCg -3'
miRNA:   3'- cGCACCGG--UCuaAUCGUGCc-----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 184469 0.68 0.939906
Target:  5'- gGUGUGGCUGcGAacggUAGCAgucgcCGGGgAGCCg -3'
miRNA:   3'- -CGCACCGGU-CUa---AUCGU-----GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 183397 0.67 0.960156
Target:  5'- aGCaUGGCgCAGuucUGGCACGGu--GCCa -3'
miRNA:   3'- -CGcACCG-GUCua-AUCGUGCCuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 178531 0.7 0.875433
Target:  5'- cGCGUGGCggCGGcggUGGUAgCGG-CAGCCu -3'
miRNA:   3'- -CGCACCG--GUCua-AUCGU-GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 177286 0.7 0.868251
Target:  5'- cGCGUGGUUGGAgcAGCACcaggaGGAgGGCa -3'
miRNA:   3'- -CGCACCGGUCUaaUCGUG-----CCUgUCGg -5'
30235 5' -54.5 NC_006273.1 + 176288 0.67 0.966743
Target:  5'- cCGUGcGCguGAgcAGCGCuacucgcuguuuGGGCGGCCu -3'
miRNA:   3'- cGCAC-CGguCUaaUCGUG------------CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 175663 0.66 0.972521
Target:  5'- cGCGUuuuguggaauuGGCCGGuu--GCugGGGCuuguacgcGGCCa -3'
miRNA:   3'- -CGCA-----------CCGGUCuaauCGugCCUG--------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 171156 0.68 0.93023
Target:  5'- cGCG-GGCCAGGUcaucggcgcUAGCGCGcGAU-GUCg -3'
miRNA:   3'- -CGCaCCGGUCUA---------AUCGUGC-CUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 170851 0.68 0.93023
Target:  5'- gGCGaGGCCGGc--GGCAgGGACaccgaugucgAGCCg -3'
miRNA:   3'- -CGCaCCGGUCuaaUCGUgCCUG----------UCGG- -5'
30235 5' -54.5 NC_006273.1 + 167708 0.71 0.853281
Target:  5'- aGUGUGGCCuccaguGGUUGGUGCgGGAUGGUg -3'
miRNA:   3'- -CGCACCGGu-----CUAAUCGUG-CCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 167218 0.67 0.955421
Target:  5'- aGCGUcagcGGCCGGuggUGGCugguaaggucgaucAUGGGCGGCg -3'
miRNA:   3'- -CGCA----CCGGUCua-AUCG--------------UGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 167175 0.69 0.913993
Target:  5'- -gGUGGCCAcGGcgGGCGCaG-CGGCCg -3'
miRNA:   3'- cgCACCGGU-CUaaUCGUGcCuGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.