miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 164879 0.68 0.948672
Target:  5'- ---gGGCCA---UAGCGCGaGugAGCCg -3'
miRNA:   3'- cgcaCCGGUcuaAUCGUGC-CugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 163188 0.67 0.956546
Target:  5'- -gGUGGCCGuGGUcugucggcAGUGCGGACAcuGCCu -3'
miRNA:   3'- cgCACCGGU-CUAa-------UCGUGCCUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 162926 0.66 0.983749
Target:  5'- aCGUGGCCGcc--GGCACcGACGGUg -3'
miRNA:   3'- cGCACCGGUcuaaUCGUGcCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 161834 0.68 0.944402
Target:  5'- cGCGUcGGCCucuGGAggAGCAC-GugAGUCg -3'
miRNA:   3'- -CGCA-CCGG---UCUaaUCGUGcCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 159804 0.69 0.913993
Target:  5'- cGCGUgucgauGGCCAGc--GGCGCGcACAGUCg -3'
miRNA:   3'- -CGCA------CCGGUCuaaUCGUGCcUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156933 0.66 0.981645
Target:  5'- gGCGUGGUUucccGGUcggacgcgauugaUGGCACGGACGacgacGCUg -3'
miRNA:   3'- -CGCACCGGu---CUA-------------AUCGUGCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 156502 0.67 0.96973
Target:  5'- gGCGUGGaUCuGGUgcGCAa-GACGGCCu -3'
miRNA:   3'- -CGCACC-GGuCUAauCGUgcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156350 0.67 0.963553
Target:  5'- cGCGUGGgcCCAGccUGGCgcacuACGuGACGGCUu -3'
miRNA:   3'- -CGCACC--GGUCuaAUCG-----UGC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 156278 0.67 0.963553
Target:  5'- cGCG-GGUCAucuacggGGaCACGGACAGCg -3'
miRNA:   3'- -CGCaCCGGUcuaa---UC-GUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 155805 0.66 0.977537
Target:  5'- aCGUGGCCAuGUcgcgAGuCACGGACcccgAGCa -3'
miRNA:   3'- cGCACCGGUcUAa---UC-GUGCCUG----UCGg -5'
30235 5' -54.5 NC_006273.1 + 153620 0.66 0.977537
Target:  5'- cGgGUGGCCGGcgUcAGCGuucGCAGCCc -3'
miRNA:   3'- -CgCACCGGUCuaA-UCGUgccUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 152882 0.7 0.889165
Target:  5'- gGCGUagccauuggGGCCGuGggUGGCGCGG-UGGCCu -3'
miRNA:   3'- -CGCA---------CCGGU-CuaAUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 151986 0.72 0.795177
Target:  5'- gGCGccgccgGGCCGGG-UGGCgGCGGcaGCAGCCc -3'
miRNA:   3'- -CGCa-----CCGGUCUaAUCG-UGCC--UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 147560 0.75 0.661171
Target:  5'- gGCGUcGGCgGGAgcAGCGgGGGCGGCg -3'
miRNA:   3'- -CGCA-CCGgUCUaaUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 146494 0.66 0.981844
Target:  5'- gGCuGUGGCCAGcgccUGGUACuuGACAcuGCCg -3'
miRNA:   3'- -CG-CACCGGUCua--AUCGUGc-CUGU--CGG- -5'
30235 5' -54.5 NC_006273.1 + 144198 0.75 0.651157
Target:  5'- cGCGUGGCCGagcggugcgacGAccGGCACGG-CGGCUc -3'
miRNA:   3'- -CGCACCGGU-----------CUaaUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 143137 0.72 0.777185
Target:  5'- uGUGUGGCCgucuuucaggAGAcgGGCACGG-CGcGCCg -3'
miRNA:   3'- -CGCACCGG----------UCUaaUCGUGCCuGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 141333 0.8 0.371601
Target:  5'- uGCGUGGCCGcacaccuGUUGGagcaACGGGCGGCCg -3'
miRNA:   3'- -CGCACCGGUc------UAAUCg---UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 141167 0.68 0.952719
Target:  5'- cGCGgacUGcGCCGGGg-GGCgGCGGGCAcGCCg -3'
miRNA:   3'- -CGC---AC-CGGUCUaaUCG-UGCCUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 140646 0.67 0.963553
Target:  5'- gGCG-GGCCGGGaaggggAGCugGGugGGg- -3'
miRNA:   3'- -CGCaCCGGUCUaa----UCGugCCugUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.