miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 139672 0.68 0.948672
Target:  5'- aCGUGGCUug--UGGgACGGGC-GCCg -3'
miRNA:   3'- cGCACCGGucuaAUCgUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 134842 0.67 0.963553
Target:  5'- gGUGgGGCCGGAcaGGUGagccaGGugAGCCg -3'
miRNA:   3'- -CGCaCCGGUCUaaUCGUg----CCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 133479 0.66 0.979776
Target:  5'- gGCGUgcaGGCgCGGAc--GCugGcGGCGGCCc -3'
miRNA:   3'- -CGCA---CCG-GUCUaauCGugC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 133418 0.71 0.860865
Target:  5'- uGCGUGGCCGuca-AGCgACGcGACGGCg -3'
miRNA:   3'- -CGCACCGGUcuaaUCG-UGC-CUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 132398 0.72 0.786248
Target:  5'- aGCGUccgacGCCGGGUUGGCACGacGCGGCg -3'
miRNA:   3'- -CGCAc----CGGUCUAAUCGUGCc-UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 128964 0.68 0.948672
Target:  5'- gGCGUcGGCCGuGUUuuugAGCGCGcGCAGCa -3'
miRNA:   3'- -CGCA-CCGGUcUAA----UCGUGCcUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 127236 0.68 0.944402
Target:  5'- cGCGccucgauguUGGCCGGGUUcaacGGUugcCGGuCGGCCa -3'
miRNA:   3'- -CGC---------ACCGGUCUAA----UCGu--GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 126770 0.66 0.975121
Target:  5'- cGCGUGGuCCAGA--GGCGCGcGCAcuucgaGCa -3'
miRNA:   3'- -CGCACC-GGUCUaaUCGUGCcUGU------CGg -5'
30235 5' -54.5 NC_006273.1 + 125890 0.68 0.946137
Target:  5'- uCGUaGGCCAGA---GCcucaucaucacccagACGGACAGUCa -3'
miRNA:   3'- cGCA-CCGGUCUaauCG---------------UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 124243 0.72 0.786248
Target:  5'- cGCGUGGCaugcuuGGUgucugcgGGCGCGaGAgGGCCg -3'
miRNA:   3'- -CGCACCGgu----CUAa------UCGUGC-CUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 122806 0.68 0.93023
Target:  5'- uGCGccaGCCAGGUagaagaAGCACcGGCGGCCg -3'
miRNA:   3'- -CGCac-CGGUCUAa-----UCGUGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 120739 0.72 0.812602
Target:  5'- uGCG-GGCCAgGAUgccGGCcgccaGGGCGGCCa -3'
miRNA:   3'- -CGCaCCGGU-CUAa--UCGug---CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 119595 0.67 0.956546
Target:  5'- cGC-UGGUCGGcg-GGUGCGGugAGUCg -3'
miRNA:   3'- -CGcACCGGUCuaaUCGUGCCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 119157 0.68 0.93023
Target:  5'- aGCGaga--AGAUgucGCGCGGACAGCCg -3'
miRNA:   3'- -CGCaccggUCUAau-CGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 115477 0.81 0.348236
Target:  5'- aGCGUcGGCauauGAagGGCGCGGGCGGCCa -3'
miRNA:   3'- -CGCA-CCGgu--CUaaUCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 113512 0.68 0.944402
Target:  5'- gGCGgcgGGuugcCCGGGggGcGCGCGGGCGGCg -3'
miRNA:   3'- -CGCa--CC----GGUCUaaU-CGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 111329 0.67 0.963553
Target:  5'- gGCcUGGCCGca-UAGCGCGGcCGcGCCg -3'
miRNA:   3'- -CGcACCGGUcuaAUCGUGCCuGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 106232 0.66 0.972521
Target:  5'- cGgGUGGCCAGc--GGCGcCGGuuuGCCu -3'
miRNA:   3'- -CgCACCGGUCuaaUCGU-GCCuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 105422 0.72 0.803964
Target:  5'- uGCGUGGCCAcgugguuuucGAgaacgUGGUA-GGACAGCg -3'
miRNA:   3'- -CGCACCGGU----------CUa----AUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 104845 0.7 0.889165
Target:  5'- aGCGUGGCCAGuccGGCACuu---GCCg -3'
miRNA:   3'- -CGCACCGGUCuaaUCGUGccuguCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.