miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 73373 0.79 0.419706
Target:  5'- aGCG-GGcCCAGAgucgcaaagcGCGCGGGCAGCCa -3'
miRNA:   3'- -CGCaCC-GGUCUaau-------CGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 95283 0.8 0.396011
Target:  5'- gGUGUGGCCGGA--AGCgcucggggucgACGGugGGCCg -3'
miRNA:   3'- -CGCACCGGUCUaaUCG-----------UGCCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 141333 0.8 0.371601
Target:  5'- uGCGUGGCCGcacaccuGUUGGagcaACGGGCGGCCg -3'
miRNA:   3'- -CGCACCGGUc------UAAUCg---UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 115477 0.81 0.348236
Target:  5'- aGCGUcGGCauauGAagGGCGCGGGCGGCCa -3'
miRNA:   3'- -CGCA-CCGgu--CUaaUCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 72686 0.82 0.30472
Target:  5'- gGCGagcUGGUgGGGUgaAGCACGGGCAGCCg -3'
miRNA:   3'- -CGC---ACCGgUCUAa-UCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 120739 0.72 0.812602
Target:  5'- uGCG-GGCCAgGAUgccGGCcgccaGGGCGGCCa -3'
miRNA:   3'- -CGCaCCGGU-CUAa--UCGug---CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 195022 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 47276 0.69 0.925047
Target:  5'- uGCGUgGGCUGGAacuuGCGCGGcaacACAGCa -3'
miRNA:   3'- -CGCA-CCGGUCUaau-CGUGCC----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 51624 0.69 0.919635
Target:  5'- gGCGacggcaGGCuCGGc--GGCGCGGACAGCa -3'
miRNA:   3'- -CGCa-----CCG-GUCuaaUCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 196708 0.69 0.919635
Target:  5'- cGCGUGGCaGGAgcUGGCGCaGuACgAGCCg -3'
miRNA:   3'- -CGCACCGgUCUa-AUCGUGcC-UG-UCGG- -5'
30235 5' -54.5 NC_006273.1 + 48564 0.69 0.919635
Target:  5'- cGUGUGGCgGGGUgaGGgGCGG-CAuGCCg -3'
miRNA:   3'- -CGCACCGgUCUAa-UCgUGCCuGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 218169 0.69 0.917966
Target:  5'- aCGUGGUUAucuucgucgucgucGcgUGGCAUGGGCGGCg -3'
miRNA:   3'- cGCACCGGU--------------CuaAUCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 216969 0.69 0.913993
Target:  5'- cGCG-GGCCGucUUGGcCACGGccGCAGCg -3'
miRNA:   3'- -CGCaCCGGUcuAAUC-GUGCC--UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 167175 0.69 0.913993
Target:  5'- -gGUGGCCAcGGcgGGCGCaG-CGGCCg -3'
miRNA:   3'- cgCACCGGU-CUaaUCGUGcCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 49949 0.69 0.908123
Target:  5'- aGCGUucgGGCCAGGc---CACGuGCAGCCg -3'
miRNA:   3'- -CGCA---CCGGUCUaaucGUGCcUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 196118 0.69 0.902026
Target:  5'- gGCGUuucuGGCCAac--AGCACGGGCcgcGCCa -3'
miRNA:   3'- -CGCA----CCGGUcuaaUCGUGCCUGu--CGG- -5'
30235 5' -54.5 NC_006273.1 + 41371 0.69 0.901405
Target:  5'- cGCGcGGCCAG-UUGGCGggguucauaucccCGGGCAacggcGCCg -3'
miRNA:   3'- -CGCaCCGGUCuAAUCGU-------------GCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 72843 0.7 0.895062
Target:  5'- aGCGUucgaaaccagaaaGGCCAuc---GUGCGGACGGCCa -3'
miRNA:   3'- -CGCA-------------CCGGUcuaauCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 232819 0.7 0.868251
Target:  5'- -gGUGGCUAGGgugAGCACcu-CAGCCu -3'
miRNA:   3'- cgCACCGGUCUaa-UCGUGccuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 195067 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.