miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 196118 0.69 0.902026
Target:  5'- gGCGUuucuGGCCAac--AGCACGGGCcgcGCCa -3'
miRNA:   3'- -CGCA----CCGGUcuaaUCGUGCCUGu--CGG- -5'
30235 5' -54.5 NC_006273.1 + 64835 0.68 0.939906
Target:  5'- cGCGguucGGCCGGAccguGCACGcGcucucGCGGCCu -3'
miRNA:   3'- -CGCa---CCGGUCUaau-CGUGC-C-----UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 184469 0.68 0.939906
Target:  5'- gGUGUGGCUGcGAacggUAGCAgucgcCGGGgAGCCg -3'
miRNA:   3'- -CGCACCGGU-CUa---AUCGU-----GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 113512 0.68 0.944402
Target:  5'- gGCGgcgGGuugcCCGGGggGcGCGCGGGCGGCg -3'
miRNA:   3'- -CGCa--CC----GGUCUaaU-CGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 127236 0.68 0.944402
Target:  5'- cGCGccucgauguUGGCCGGGUUcaacGGUugcCGGuCGGCCa -3'
miRNA:   3'- -CGC---------ACCGGUCUAA----UCGu--GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 64003 0.68 0.948672
Target:  5'- -gGUGGcCCAGAUgagcaaGGCGCucaaaaaGACGGCCu -3'
miRNA:   3'- cgCACC-GGUCUAa-----UCGUGc------CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 164879 0.68 0.948672
Target:  5'- ---gGGCCA---UAGCGCGaGugAGCCg -3'
miRNA:   3'- cgcaCCGGUcuaAUCGUGC-CugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 139672 0.68 0.948672
Target:  5'- aCGUGGCUug--UGGgACGGGC-GCCg -3'
miRNA:   3'- cGCACCGGucuaAUCgUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 128964 0.68 0.948672
Target:  5'- gGCGUcGGCCGuGUUuuugAGCGCGcGCAGCa -3'
miRNA:   3'- -CGCA-CCGGUcUAA----UCGUGCcUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 30219 0.68 0.939906
Target:  5'- cCGcGGCCAGcgUGGCGaGGACAcuuuccgcGCCc -3'
miRNA:   3'- cGCaCCGGUCuaAUCGUgCCUGU--------CGG- -5'
30235 5' -54.5 NC_006273.1 + 89432 0.68 0.935183
Target:  5'- gGCGUaGGCCAGc--AGCGgcUGGAaGGCCa -3'
miRNA:   3'- -CGCA-CCGGUCuaaUCGU--GCCUgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 37280 0.68 0.93023
Target:  5'- cCGUGGCCGccGAgcAGCccuUGcGACGGCCg -3'
miRNA:   3'- cGCACCGGU--CUaaUCGu--GC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 49949 0.69 0.908123
Target:  5'- aGCGUucgGGCCAGGc---CACGuGCAGCCg -3'
miRNA:   3'- -CGCA---CCGGUCUaaucGUGCcUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 167175 0.69 0.913993
Target:  5'- -gGUGGCCAcGGcgGGCGCaG-CGGCCg -3'
miRNA:   3'- cgCACCGGU-CUaaUCGUGcCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 216969 0.69 0.913993
Target:  5'- cGCG-GGCCGucUUGGcCACGGccGCAGCg -3'
miRNA:   3'- -CGCaCCGGUcuAAUC-GUGCC--UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 218169 0.69 0.917966
Target:  5'- aCGUGGUUAucuucgucgucgucGcgUGGCAUGGGCGGCg -3'
miRNA:   3'- cGCACCGGU--------------CuaAUCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 48564 0.69 0.919635
Target:  5'- cGUGUGGCgGGGUgaGGgGCGG-CAuGCCg -3'
miRNA:   3'- -CGCACCGgUCUAa-UCgUGCCuGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 196708 0.69 0.919635
Target:  5'- cGCGUGGCaGGAgcUGGCGCaGuACgAGCCg -3'
miRNA:   3'- -CGCACCGgUCUa-AUCGUGcC-UG-UCGG- -5'
30235 5' -54.5 NC_006273.1 + 51624 0.69 0.919635
Target:  5'- gGCGacggcaGGCuCGGc--GGCGCGGACAGCa -3'
miRNA:   3'- -CGCa-----CCG-GUCuaaUCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 47276 0.69 0.925047
Target:  5'- uGCGUgGGCUGGAacuuGCGCGGcaacACAGCa -3'
miRNA:   3'- -CGCA-CCGGUCUaau-CGUGCC----UGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.