miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 83320 0.7 0.868251
Target:  5'- cGCGUGGuCCGGGUggacccGGCGUGGugGGaCCc -3'
miRNA:   3'- -CGCACC-GGUCUAa-----UCGUGCCugUC-GG- -5'
30235 5' -54.5 NC_006273.1 + 177286 0.7 0.868251
Target:  5'- cGCGUGGUUGGAgcAGCACcaggaGGAgGGCa -3'
miRNA:   3'- -CGCACCGGUCUaaUCGUG-----CCUgUCGg -5'
30235 5' -54.5 NC_006273.1 + 178531 0.7 0.875433
Target:  5'- cGCGUGGCggCGGcggUGGUAgCGG-CAGCCu -3'
miRNA:   3'- -CGCACCG--GUCua-AUCGU-GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 104845 0.7 0.889165
Target:  5'- aGCGUGGCCAGuccGGCACuu---GCCg -3'
miRNA:   3'- -CGCACCGGUCuaaUCGUGccuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 152882 0.7 0.889165
Target:  5'- gGCGUagccauuggGGCCGuGggUGGCGCGG-UGGCCu -3'
miRNA:   3'- -CGCA---------CCGGU-CuaAUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 213708 0.7 0.895706
Target:  5'- -aGUGGCgCAGGUcguGCACGu-CGGCCa -3'
miRNA:   3'- cgCACCG-GUCUAau-CGUGCcuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 1225 0.69 0.902026
Target:  5'- gGCGUuucuGGCCAac--AGCACGGGCcgcGCCa -3'
miRNA:   3'- -CGCA----CCGGUcuaaUCGUGCCUGu--CGG- -5'
30235 5' -54.5 NC_006273.1 + 53896 0.69 0.908123
Target:  5'- cCGUaGGCUAGAUcagucggacugGGUACGGGguGCCu -3'
miRNA:   3'- cGCA-CCGGUCUAa----------UCGUGCCUguCGG- -5'
30235 5' -54.5 NC_006273.1 + 159804 0.69 0.913993
Target:  5'- cGCGUgucgauGGCCAGc--GGCGCGcACAGUCg -3'
miRNA:   3'- -CGCA------CCGGUCuaaUCGUGCcUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 133418 0.71 0.860865
Target:  5'- uGCGUGGCCGuca-AGCgACGcGACGGCg -3'
miRNA:   3'- -CGCACCGGUcuaaUCG-UGC-CUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 42693 0.71 0.860865
Target:  5'- ---aGGCCaacAGAUcugGGCGCaGACAGCCg -3'
miRNA:   3'- cgcaCCGG---UCUAa--UCGUGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 70982 0.71 0.860115
Target:  5'- cCGUGGU-------GCACGGACAGCCu -3'
miRNA:   3'- cGCACCGgucuaauCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 1950 0.75 0.661171
Target:  5'- cGCgGUGGCUGGGUU-GCGCGGcGgGGCCg -3'
miRNA:   3'- -CG-CACCGGUCUAAuCGUGCC-UgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 147560 0.75 0.661171
Target:  5'- gGCGUcGGCgGGAgcAGCGgGGGCGGCg -3'
miRNA:   3'- -CGCA-CCGgUCUaaUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 105422 0.72 0.803964
Target:  5'- uGCGUGGCCAcgugguuuucGAgaacgUGGUA-GGACAGCg -3'
miRNA:   3'- -CGCACCGGU----------CUa----AUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 129 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 174 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 234960 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 235005 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 167708 0.71 0.853281
Target:  5'- aGUGUGGCCuccaguGGUUGGUGCgGGAUGGUg -3'
miRNA:   3'- -CGCACCGGu-----CUAAUCGUG-CCUGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.