Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30235 | 5' | -54.5 | NC_006273.1 | + | 188437 | 0.69 | 0.925047 |
Target: 5'- uGgGUGGaacagCAGGUUguagguggugaGGCGCGGAUAGCg -3' miRNA: 3'- -CgCACCg----GUCUAA-----------UCGUGCCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 53896 | 0.69 | 0.908123 |
Target: 5'- cCGUaGGCUAGAUcagucggacugGGUACGGGguGCCu -3' miRNA: 3'- cGCA-CCGGUCUAa----------UCGUGCCUguCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 42693 | 0.71 | 0.860865 |
Target: 5'- ---aGGCCaacAGAUcugGGCGCaGACAGCCg -3' miRNA: 3'- cgcaCCGG---UCUAa--UCGUGcCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 105422 | 0.72 | 0.803964 |
Target: 5'- uGCGUGGCCAcgugguuuucGAgaacgUGGUA-GGACAGCg -3' miRNA: 3'- -CGCACCGGU----------CUa----AUCGUgCCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 161834 | 0.68 | 0.944402 |
Target: 5'- cGCGUcGGCCucuGGAggAGCAC-GugAGUCg -3' miRNA: 3'- -CGCA-CCGG---UCUaaUCGUGcCugUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 205264 | 0.68 | 0.93023 |
Target: 5'- aGCGaucUGGCUAGccUGGCGCucACGGCCg -3' miRNA: 3'- -CGC---ACCGGUCuaAUCGUGccUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 213708 | 0.7 | 0.895706 |
Target: 5'- -aGUGGCgCAGGUcguGCACGu-CGGCCa -3' miRNA: 3'- cgCACCG-GUCUAau-CGUGCcuGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 147560 | 0.75 | 0.661171 |
Target: 5'- gGCGUcGGCgGGAgcAGCGgGGGCGGCg -3' miRNA: 3'- -CGCA-CCGgUCUaaUCGUgCCUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 122806 | 0.68 | 0.93023 |
Target: 5'- uGCGccaGCCAGGUagaagaAGCACcGGCGGCCg -3' miRNA: 3'- -CGCac-CGGUCUAa-----UCGUGcCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 1950 | 0.75 | 0.661171 |
Target: 5'- cGCgGUGGCUGGGUU-GCGCGGcGgGGCCg -3' miRNA: 3'- -CG-CACCGGUCUAAuCGUGCC-UgUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 1225 | 0.69 | 0.902026 |
Target: 5'- gGCGUuucuGGCCAac--AGCACGGGCcgcGCCa -3' miRNA: 3'- -CGCA----CCGGUcuaaUCGUGCCUGu--CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 86792 | 0.69 | 0.925047 |
Target: 5'- cCGUGGaCCgcguAGAcgGGCACGGGCGGg- -3' miRNA: 3'- cGCACC-GG----UCUaaUCGUGCCUGUCgg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 178531 | 0.7 | 0.875433 |
Target: 5'- cGCGUGGCggCGGcggUGGUAgCGG-CAGCCu -3' miRNA: 3'- -CGCACCG--GUCua-AUCGU-GCCuGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 133418 | 0.71 | 0.860865 |
Target: 5'- uGCGUGGCCGuca-AGCgACGcGACGGCg -3' miRNA: 3'- -CGCACCGGUcuaaUCG-UGC-CUGUCGg -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 235005 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 129 | 0.71 | 0.845504 |
Target: 5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3' miRNA: 3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 141167 | 0.68 | 0.952719 |
Target: 5'- cGCGgacUGcGCCGGGg-GGCgGCGGGCAcGCCg -3' miRNA: 3'- -CGC---AC-CGGUCUaaUCG-UGCCUGU-CGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 125890 | 0.68 | 0.946137 |
Target: 5'- uCGUaGGCCAGA---GCcucaucaucacccagACGGACAGUCa -3' miRNA: 3'- cGCA-CCGGUCUaauCG---------------UGCCUGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 29813 | 0.68 | 0.935183 |
Target: 5'- -gGUGGCUGGGagUGGUgGCGG-CAGCCa -3' miRNA: 3'- cgCACCGGUCUa-AUCG-UGCCuGUCGG- -5' |
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30235 | 5' | -54.5 | NC_006273.1 | + | 170851 | 0.68 | 0.93023 |
Target: 5'- gGCGaGGCCGGc--GGCAgGGACaccgaugucgAGCCg -3' miRNA: 3'- -CGCaCCGGUCuaaUCGUgCCUG----------UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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