miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 24960 0.68 0.944402
Target:  5'- uGCGgcugcuuuugGGCUucuacAGCACGGugGGCCu -3'
miRNA:   3'- -CGCa---------CCGGucuaaUCGUGCCugUCGG- -5'
30235 5' -54.5 NC_006273.1 + 213708 0.7 0.895706
Target:  5'- -aGUGGCgCAGGUcguGCACGu-CGGCCa -3'
miRNA:   3'- cgCACCG-GUCUAau-CGUGCcuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 147560 0.75 0.661171
Target:  5'- gGCGUcGGCgGGAgcAGCGgGGGCGGCg -3'
miRNA:   3'- -CGCA-CCGgUCUaaUCGUgCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 84307 0.68 0.943521
Target:  5'- aGCuGUGGCUgcacacggAGCACGGGCuGCUg -3'
miRNA:   3'- -CG-CACCGGucuaa---UCGUGCCUGuCGG- -5'
30235 5' -54.5 NC_006273.1 + 1950 0.75 0.661171
Target:  5'- cGCgGUGGCUGGGUU-GCGCGGcGgGGCCg -3'
miRNA:   3'- -CG-CACCGGUCUAAuCGUGCC-UgUCGG- -5'
30235 5' -54.5 NC_006273.1 + 76622 0.66 0.975121
Target:  5'- cCGUGGCCGc---GGC-CGG-CGGCCu -3'
miRNA:   3'- cGCACCGGUcuaaUCGuGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 129 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 14008 0.66 0.972521
Target:  5'- gGCG-GGCgCGGggUGGCggaGCGGGgAGCg -3'
miRNA:   3'- -CGCaCCG-GUCuaAUCG---UGCCUgUCGg -5'
30235 5' -54.5 NC_006273.1 + 106232 0.66 0.972521
Target:  5'- cGgGUGGCCAGc--GGCGcCGGuuuGCCu -3'
miRNA:   3'- -CgCACCGGUCuaaUCGU-GCCuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 156278 0.67 0.963553
Target:  5'- cGCG-GGUCAucuacggGGaCACGGACAGCg -3'
miRNA:   3'- -CGCaCCGGUcuaa---UC-GUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 7877 0.67 0.963553
Target:  5'- aCGUGGCguGAcgaagcUGGUACGGugGCGGCg -3'
miRNA:   3'- cGCACCGguCUa-----AUCGUGCC--UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 141167 0.68 0.952719
Target:  5'- cGCGgacUGcGCCGGGg-GGCgGCGGGCAcGCCg -3'
miRNA:   3'- -CGC---AC-CGGUCUaaUCG-UGCCUGU-CGG- -5'
30235 5' -54.5 NC_006273.1 + 125890 0.68 0.946137
Target:  5'- uCGUaGGCCAGA---GCcucaucaucacccagACGGACAGUCa -3'
miRNA:   3'- cGCA-CCGGUCUaauCG---------------UGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 119157 0.68 0.93023
Target:  5'- aGCGaga--AGAUgucGCGCGGACAGCCg -3'
miRNA:   3'- -CGCaccggUCUAau-CGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 122806 0.68 0.93023
Target:  5'- uGCGccaGCCAGGUagaagaAGCACcGGCGGCCg -3'
miRNA:   3'- -CGCac-CGGUCUAa-----UCGUGcCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 188437 0.69 0.925047
Target:  5'- uGgGUGGaacagCAGGUUguagguggugaGGCGCGGAUAGCg -3'
miRNA:   3'- -CgCACCg----GUCUAA-----------UCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 53896 0.69 0.908123
Target:  5'- cCGUaGGCUAGAUcagucggacugGGUACGGGguGCCu -3'
miRNA:   3'- cGCA-CCGGUCUAa----------UCGUGCCUguCGG- -5'
30235 5' -54.5 NC_006273.1 + 178531 0.7 0.875433
Target:  5'- cGCGUGGCggCGGcggUGGUAgCGG-CAGCCu -3'
miRNA:   3'- -CGCACCG--GUCua-AUCGU-GCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 133418 0.71 0.860865
Target:  5'- uGCGUGGCCGuca-AGCgACGcGACGGCg -3'
miRNA:   3'- -CGCACCGGUcuaaUCG-UGC-CUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 235005 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.