miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30235 5' -54.5 NC_006273.1 + 234960 0.71 0.845504
Target:  5'- uGUGuUGGCCGGGUguguCGCGGGCGuguGCCg -3'
miRNA:   3'- -CGC-ACCGGUCUAauc-GUGCCUGU---CGG- -5'
30235 5' -54.5 NC_006273.1 + 70982 0.71 0.860115
Target:  5'- cCGUGGU-------GCACGGACAGCCu -3'
miRNA:   3'- cGCACCGgucuaauCGUGCCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 177286 0.7 0.868251
Target:  5'- cGCGUGGUUGGAgcAGCACcaggaGGAgGGCa -3'
miRNA:   3'- -CGCACCGGUCUaaUCGUG-----CCUgUCGg -5'
30235 5' -54.5 NC_006273.1 + 152882 0.7 0.889165
Target:  5'- gGCGUagccauuggGGCCGuGggUGGCGCGG-UGGCCu -3'
miRNA:   3'- -CGCA---------CCGGU-CuaAUCGUGCCuGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 1816 0.69 0.919635
Target:  5'- cGCGUGGCaGGAgcUGGCGCaGuACgAGCCg -3'
miRNA:   3'- -CGCACCGgUCUa-AUCGUGcC-UG-UCGG- -5'
30235 5' -54.5 NC_006273.1 + 104509 0.67 0.963553
Target:  5'- cGCGaucggcGGCCGGGUc-GCGCGGcagugACAGCUu -3'
miRNA:   3'- -CGCa-----CCGGUCUAauCGUGCC-----UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 183397 0.67 0.960156
Target:  5'- aGCaUGGCgCAGuucUGGCACGGu--GCCa -3'
miRNA:   3'- -CGcACCG-GUCua-AUCGUGCCuguCGG- -5'
30235 5' -54.5 NC_006273.1 + 140646 0.67 0.963553
Target:  5'- gGCG-GGCCGGGaaggggAGCugGGugGGg- -3'
miRNA:   3'- -CGCaCCGGUCUaa----UCGugCCugUCgg -5'
30235 5' -54.5 NC_006273.1 + 120739 0.72 0.812602
Target:  5'- uGCG-GGCCAgGAUgccGGCcgccaGGGCGGCCa -3'
miRNA:   3'- -CGCaCCGGU-CUAa--UCGug---CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 208567 0.67 0.966743
Target:  5'- -gGUGGCgAug-UAGCGCcgucuuggaaaaGGACGGCCa -3'
miRNA:   3'- cgCACCGgUcuaAUCGUG------------CCUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 189619 0.67 0.96973
Target:  5'- uCGgaagGGCCGGu---GUACGGACAuuuauGCCu -3'
miRNA:   3'- cGCa---CCGGUCuaauCGUGCCUGU-----CGG- -5'
30235 5' -54.5 NC_006273.1 + 21886 0.66 0.972521
Target:  5'- uGCGUGcccuucaucaGCCAGAgcauCGCGGacaacaacuGCAGCCg -3'
miRNA:   3'- -CGCAC----------CGGUCUaaucGUGCC---------UGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 232232 0.66 0.972521
Target:  5'- aGCGgGGUCGGGguagGGUACGGugGGa- -3'
miRNA:   3'- -CGCaCCGGUCUaa--UCGUGCCugUCgg -5'
30235 5' -54.5 NC_006273.1 + 37280 0.68 0.93023
Target:  5'- cCGUGGCCGccGAgcAGCccuUGcGACGGCCg -3'
miRNA:   3'- cGCACCGGU--CUaaUCGu--GC-CUGUCGG- -5'
30235 5' -54.5 NC_006273.1 + 47276 0.69 0.925047
Target:  5'- uGCGUgGGCUGGAacuuGCGCGGcaacACAGCa -3'
miRNA:   3'- -CGCA-CCGGUCUaau-CGUGCC----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 51624 0.69 0.919635
Target:  5'- gGCGacggcaGGCuCGGc--GGCGCGGACAGCa -3'
miRNA:   3'- -CGCa-----CCG-GUCuaaUCGUGCCUGUCGg -5'
30235 5' -54.5 NC_006273.1 + 185548 0.66 0.975121
Target:  5'- uCGUGGCUguGGcgUAGCGCGuuuuguACAGCg -3'
miRNA:   3'- cGCACCGG--UCuaAUCGUGCc-----UGUCGg -5'
30235 5' -54.5 NC_006273.1 + 33387 0.66 0.975121
Target:  5'- aGCGaGuGCCAGAguaGGCGCuGGACGcgcaccGCCu -3'
miRNA:   3'- -CGCaC-CGGUCUaa-UCGUG-CCUGU------CGG- -5'
30235 5' -54.5 NC_006273.1 + 94840 0.66 0.972521
Target:  5'- gGUG-GGCCGGGUggacggUGGUggGGACGGgCg -3'
miRNA:   3'- -CGCaCCGGUCUA------AUCGugCCUGUCgG- -5'
30235 5' -54.5 NC_006273.1 + 89432 0.68 0.935183
Target:  5'- gGCGUaGGCCAGc--AGCGgcUGGAaGGCCa -3'
miRNA:   3'- -CGCA-CCGGUCuaaUCGU--GCCUgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.