miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30236 3' -51.2 NC_006273.1 + 85649 0.66 0.997064
Target:  5'- --cCGUAACAgCGCcggcaGCCGGCCCa- -3'
miRNA:   3'- cauGCAUUGUaGUGua---CGGUCGGGaa -5'
30236 3' -51.2 NC_006273.1 + 73471 0.66 0.997064
Target:  5'- ---gGUAGCG-CAgA-GCCAGCCCUUg -3'
miRNA:   3'- caugCAUUGUaGUgUaCGGUCGGGAA- -5'
30236 3' -51.2 NC_006273.1 + 154068 0.66 0.99654
Target:  5'- cUGCGUGAgGUCAU-UGCCAGCgUg- -3'
miRNA:   3'- cAUGCAUUgUAGUGuACGGUCGgGaa -5'
30236 3' -51.2 NC_006273.1 + 114827 0.66 0.995942
Target:  5'- cUACGUGACguGUCuCAUGCUguuuguGCCCUa -3'
miRNA:   3'- cAUGCAUUG--UAGuGUACGGu-----CGGGAa -5'
30236 3' -51.2 NC_006273.1 + 227227 0.66 0.995942
Target:  5'- cGUACGUGAUGccUCACG-GCCaucuccgacaGGCCCUc -3'
miRNA:   3'- -CAUGCAUUGU--AGUGUaCGG----------UCGGGAa -5'
30236 3' -51.2 NC_006273.1 + 67287 0.66 0.995942
Target:  5'- uGUACGUGACc-UACAUGCUGGCgCg- -3'
miRNA:   3'- -CAUGCAUUGuaGUGUACGGUCGgGaa -5'
30236 3' -51.2 NC_006273.1 + 159283 0.66 0.995188
Target:  5'- -gGCGUGguGC-UCAUgacgccgGUGCCGGCCCa- -3'
miRNA:   3'- caUGCAU--UGuAGUG-------UACGGUCGGGaa -5'
30236 3' -51.2 NC_006273.1 + 37065 0.66 0.99449
Target:  5'- -cACGUAGaugCACugcgaggGCCAGCCCa- -3'
miRNA:   3'- caUGCAUUguaGUGua-----CGGUCGGGaa -5'
30236 3' -51.2 NC_006273.1 + 207622 0.66 0.99449
Target:  5'- -cGCGUAACGUCugAgcaGCCGGCa--- -3'
miRNA:   3'- caUGCAUUGUAGugUa--CGGUCGggaa -5'
30236 3' -51.2 NC_006273.1 + 185061 0.66 0.99449
Target:  5'- -gGCGggcAGCAUCGCGuUGCuCAGCCuCUUc -3'
miRNA:   3'- caUGCa--UUGUAGUGU-ACG-GUCGG-GAA- -5'
30236 3' -51.2 NC_006273.1 + 147880 0.67 0.992645
Target:  5'- gGUGCGUGcuguGCAUCGC--GCCAGCUa-- -3'
miRNA:   3'- -CAUGCAU----UGUAGUGuaCGGUCGGgaa -5'
30236 3' -51.2 NC_006273.1 + 153371 0.67 0.991202
Target:  5'- -gGCGgcACG-CGCGUGCCcugcgucgaccguuGGCCCUUc -3'
miRNA:   3'- caUGCauUGUaGUGUACGG--------------UCGGGAA- -5'
30236 3' -51.2 NC_006273.1 + 198306 0.67 0.990338
Target:  5'- cGUGCGU---GUCGCuggGCUGGCCCUc -3'
miRNA:   3'- -CAUGCAuugUAGUGua-CGGUCGGGAa -5'
30236 3' -51.2 NC_006273.1 + 220608 0.67 0.990338
Target:  5'- -aACGUGACAcaccguaACGUGCCAGUUCg- -3'
miRNA:   3'- caUGCAUUGUag-----UGUACGGUCGGGaa -5'
30236 3' -51.2 NC_006273.1 + 32049 0.68 0.979934
Target:  5'- aUGCGUGGCgcgGUUGCAaGCgCAGCCCUc -3'
miRNA:   3'- cAUGCAUUG---UAGUGUaCG-GUCGGGAa -5'
30236 3' -51.2 NC_006273.1 + 103519 0.71 0.939566
Target:  5'- gGUGCGUGcCGUCgaugcggccgccguaGCcgGCCAGCCCc- -3'
miRNA:   3'- -CAUGCAUuGUAG---------------UGuaCGGUCGGGaa -5'
30236 3' -51.2 NC_006273.1 + 22432 0.73 0.875683
Target:  5'- aGUGCGccAACggCAUAgUGCCAGCCCUa -3'
miRNA:   3'- -CAUGCa-UUGuaGUGU-ACGGUCGGGAa -5'
30236 3' -51.2 NC_006273.1 + 220864 1.07 0.014362
Target:  5'- cGUACGUAACAUCACAUGCCAGCCCUUg -3'
miRNA:   3'- -CAUGCAUUGUAGUGUACGGUCGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.