miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30236 5' -53.5 NC_006273.1 + 60560 0.66 0.987554
Target:  5'- aCCGAGGACAccCGcUGUUCCUCGUc- -3'
miRNA:   3'- -GGUUCCUGUcuGUcGCAGGGAGCAau -5'
30236 5' -53.5 NC_006273.1 + 213455 0.67 0.981792
Target:  5'- aUCAGGGACAGAucgugaauuagcauCAGCGUCaCCgUCa--- -3'
miRNA:   3'- -GGUUCCUGUCU--------------GUCGCAG-GG-AGcaau -5'
30236 5' -53.5 NC_006273.1 + 218271 0.67 0.980347
Target:  5'- cCCAGGGAacgcggucGACGGCGUUCCgCGa-- -3'
miRNA:   3'- -GGUUCCUgu------CUGUCGCAGGGaGCaau -5'
30236 5' -53.5 NC_006273.1 + 156290 0.67 0.975748
Target:  5'- aCGGGGACacGGACAGCGUguuuguccgCUUUCGUg- -3'
miRNA:   3'- gGUUCCUG--UCUGUCGCA---------GGGAGCAau -5'
30236 5' -53.5 NC_006273.1 + 10251 0.67 0.975748
Target:  5'- aCCGAGaGACugAGGCAGCGUCCggUUUGg-- -3'
miRNA:   3'- -GGUUC-CUG--UCUGUCGCAGG--GAGCaau -5'
30236 5' -53.5 NC_006273.1 + 80689 0.68 0.970408
Target:  5'- gCAAGGugAG-CAGCGUCUCaCGg-- -3'
miRNA:   3'- gGUUCCugUCuGUCGCAGGGaGCaau -5'
30236 5' -53.5 NC_006273.1 + 131537 0.68 0.967444
Target:  5'- -gGAGGAcCAGGCGGUGaUCCgCUCGg-- -3'
miRNA:   3'- ggUUCCU-GUCUGUCGC-AGG-GAGCaau -5'
30236 5' -53.5 NC_006273.1 + 148151 0.68 0.960896
Target:  5'- gCCAGaccGGAC-GACAGCGUCUCguaCGUg- -3'
miRNA:   3'- -GGUU---CCUGuCUGUCGCAGGGa--GCAau -5'
30236 5' -53.5 NC_006273.1 + 50133 0.69 0.945192
Target:  5'- gCAGGaacaGGCGGGCAGCGUCUCUgCGa-- -3'
miRNA:   3'- gGUUC----CUGUCUGUCGCAGGGA-GCaau -5'
30236 5' -53.5 NC_006273.1 + 21550 0.69 0.940701
Target:  5'- uUCGAGGACGGcggcgcggcGCAGCGgcugagCCuCUCGUUu -3'
miRNA:   3'- -GGUUCCUGUC---------UGUCGCa-----GG-GAGCAAu -5'
30236 5' -53.5 NC_006273.1 + 234108 0.7 0.925836
Target:  5'- uCCGAGcGGCAG-CAGCGUgCCCgCGUc- -3'
miRNA:   3'- -GGUUC-CUGUCuGUCGCA-GGGaGCAau -5'
30236 5' -53.5 NC_006273.1 + 39215 0.7 0.925836
Target:  5'- uCCGAGcGGCAG-CAGCGUgCCCgCGUc- -3'
miRNA:   3'- -GGUUC-CUGUCuGUCGCA-GGGaGCAau -5'
30236 5' -53.5 NC_006273.1 + 129949 0.7 0.914759
Target:  5'- gCCGAcGGugAGACccGCGUCCCUgGg-- -3'
miRNA:   3'- -GGUU-CCugUCUGu-CGCAGGGAgCaau -5'
30236 5' -53.5 NC_006273.1 + 212121 0.7 0.902756
Target:  5'- gCCAAGGucGCGGACAGU--UCCUCGUc- -3'
miRNA:   3'- -GGUUCC--UGUCUGUCGcaGGGAGCAau -5'
30236 5' -53.5 NC_006273.1 + 166334 0.72 0.837913
Target:  5'- uCCGuGGGuuGGGCAGgGcUCCCUCGUUGg -3'
miRNA:   3'- -GGU-UCCugUCUGUCgC-AGGGAGCAAU- -5'
30236 5' -53.5 NC_006273.1 + 209161 0.77 0.599504
Target:  5'- uCCAAGGAuCGGAaagUAGCGUCCgUCGUUu -3'
miRNA:   3'- -GGUUCCU-GUCU---GUCGCAGGgAGCAAu -5'
30236 5' -53.5 NC_006273.1 + 220898 1.09 0.008273
Target:  5'- cCCAAGGACAGACAGCGUCCCUCGUUAc -3'
miRNA:   3'- -GGUUCCUGUCUGUCGCAGGGAGCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.