miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30237 5' -57.3 NC_006273.1 + 6195 0.66 0.931151
Target:  5'- gUCACcGCUacuCUGGCCGCUGcUAGUgcUACu -3'
miRNA:   3'- -AGUGuCGG---GGCCGGCGGCuAUCA--AUG- -5'
30237 5' -57.3 NC_006273.1 + 39622 0.66 0.931151
Target:  5'- gCugGGCCauGGCCGCCGGa------ -3'
miRNA:   3'- aGugUCGGggCCGGCGGCUaucaaug -5'
30237 5' -57.3 NC_006273.1 + 40906 0.66 0.931151
Target:  5'- gCugGGCgCCGGCCcgguaaCGggAGUUACg -3'
miRNA:   3'- aGugUCGgGGCCGGcg----GCuaUCAAUG- -5'
30237 5' -57.3 NC_006273.1 + 39568 0.66 0.931151
Target:  5'- cUC-CGGCCCCgcGGCCGCgacCGAggggcgGGggGCg -3'
miRNA:   3'- -AGuGUCGGGG--CCGGCG---GCUa-----UCaaUG- -5'
30237 5' -57.3 NC_006273.1 + 131612 0.66 0.931151
Target:  5'- gCACGGCgCUGGCaCGCgCGc-GGUUGCu -3'
miRNA:   3'- aGUGUCGgGGCCG-GCG-GCuaUCAAUG- -5'
30237 5' -57.3 NC_006273.1 + 198246 0.66 0.931151
Target:  5'- cCACAGgCCaCGGCCGCCa-------- -3'
miRNA:   3'- aGUGUCgGG-GCCGGCGGcuaucaaug -5'
30237 5' -57.3 NC_006273.1 + 22268 0.66 0.931151
Target:  5'- aCGCGGCUCC-GCCGUCGGUGc---- -3'
miRNA:   3'- aGUGUCGGGGcCGGCGGCUAUcaaug -5'
30237 5' -57.3 NC_006273.1 + 234461 0.66 0.931151
Target:  5'- cUC-CGGCCCCgcGGCCGCgacCGAggggcgGGggGCg -3'
miRNA:   3'- -AGuGUCGGGG--CCGGCG---GCUa-----UCaaUG- -5'
30237 5' -57.3 NC_006273.1 + 65042 0.66 0.929653
Target:  5'- gCACAGCUCCGcggaaugucacaacGCCGCCGu--GUaucacUGCg -3'
miRNA:   3'- aGUGUCGGGGC--------------CGGCGGCuauCA-----AUG- -5'
30237 5' -57.3 NC_006273.1 + 70949 0.66 0.926598
Target:  5'- -aGCGGCCgCGGCCGCagacgacgacggacaGAUAGa--- -3'
miRNA:   3'- agUGUCGGgGCCGGCGg--------------CUAUCaaug -5'
30237 5' -57.3 NC_006273.1 + 188147 0.66 0.926081
Target:  5'- -gGCGGgCCgGGUCGCCGAguuccgGGUcggGCa -3'
miRNA:   3'- agUGUCgGGgCCGGCGGCUa-----UCAa--UG- -5'
30237 5' -57.3 NC_006273.1 + 68168 0.66 0.926081
Target:  5'- aC-CAGCCaccaCCGGCCGCUGAcgcUGuUUACg -3'
miRNA:   3'- aGuGUCGG----GGCCGGCGGCU---AUcAAUG- -5'
30237 5' -57.3 NC_006273.1 + 21665 0.66 0.920786
Target:  5'- cCACGGCgCUGGUgGCCGAcg--UGCa -3'
miRNA:   3'- aGUGUCGgGGCCGgCGGCUaucaAUG- -5'
30237 5' -57.3 NC_006273.1 + 145059 0.66 0.920786
Target:  5'- aCGCgAGUCUCGGCCuaGCCGcgGGcgACg -3'
miRNA:   3'- aGUG-UCGGGGCCGG--CGGCuaUCaaUG- -5'
30237 5' -57.3 NC_006273.1 + 31210 0.66 0.920786
Target:  5'- -gGCuGCCCUGGuuGCCGcugcgGGUaACg -3'
miRNA:   3'- agUGuCGGGGCCggCGGCua---UCAaUG- -5'
30237 5' -57.3 NC_006273.1 + 161640 0.66 0.920786
Target:  5'- cCGCugccgGGCCUCGGCCGCCGccgccacccAUGGc-GCg -3'
miRNA:   3'- aGUG-----UCGGGGCCGGCGGC---------UAUCaaUG- -5'
30237 5' -57.3 NC_006273.1 + 210979 0.66 0.920786
Target:  5'- gCACGGCCaccaCGGCCGCUucaucAUAGUc-- -3'
miRNA:   3'- aGUGUCGGg---GCCGGCGGc----UAUCAaug -5'
30237 5' -57.3 NC_006273.1 + 34242 0.66 0.920786
Target:  5'- aCAgGGCCgCCGGCaggcagcgGCCGAUgAGUUcGCg -3'
miRNA:   3'- aGUgUCGG-GGCCGg-------CGGCUA-UCAA-UG- -5'
30237 5' -57.3 NC_006273.1 + 149965 0.66 0.920786
Target:  5'- aUACGGCgUUGGCgGCCGAUaucGGcUACg -3'
miRNA:   3'- aGUGUCGgGGCCGgCGGCUA---UCaAUG- -5'
30237 5' -57.3 NC_006273.1 + 167215 0.66 0.920786
Target:  5'- -aACAGCgUCaGCgGCCGGUGGUgGCu -3'
miRNA:   3'- agUGUCGgGGcCGgCGGCUAUCAaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.