miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 3' -56.7 NC_006273.1 + 137028 0.66 0.957365
Target:  5'- gCGG-CGCGUugccacagCGUUUCGCCUGccacGUGCc -3'
miRNA:   3'- -GCCuGCGCA--------GUAGAGCGGACcu--CACG- -5'
30238 3' -56.7 NC_006273.1 + 87064 0.66 0.945659
Target:  5'- aGGACGgccuCGUCGUCgCGCUccagcacauacuUGuGAGUGCc -3'
miRNA:   3'- gCCUGC----GCAGUAGaGCGG------------AC-CUCACG- -5'
30238 3' -56.7 NC_006273.1 + 101610 0.66 0.945659
Target:  5'- aCGGA-GCGUCGUgaCgGCCgcguGAGUGCa -3'
miRNA:   3'- -GCCUgCGCAGUAgaG-CGGac--CUCACG- -5'
30238 3' -56.7 NC_006273.1 + 92322 0.66 0.94133
Target:  5'- gCGcGGCGCG-CAcgaUCUCGCUggGGuuGUGCg -3'
miRNA:   3'- -GC-CUGCGCaGU---AGAGCGGa-CCu-CACG- -5'
30238 3' -56.7 NC_006273.1 + 64805 0.66 0.94133
Target:  5'- uGGGCGaCGaagugCcgCgcCGCCUGGAGUcGCg -3'
miRNA:   3'- gCCUGC-GCa----GuaGa-GCGGACCUCA-CG- -5'
30238 3' -56.7 NC_006273.1 + 3941 0.66 0.94133
Target:  5'- uGGACGUGaaAUCUgGCUUGGuuGUGg -3'
miRNA:   3'- gCCUGCGCagUAGAgCGGACCu-CACg -5'
30238 3' -56.7 NC_006273.1 + 122965 0.67 0.936317
Target:  5'- gGGACGCGcaccuccagucccUCGUC-CGCCgcgccGGAGcgugGCg -3'
miRNA:   3'- gCCUGCGC-------------AGUAGaGCGGa----CCUCa---CG- -5'
30238 3' -56.7 NC_006273.1 + 13206 0.67 0.934429
Target:  5'- aCGGGCccgugcggcguuacaGCGUCuggugcggcaugagcUCUCGCCUGGAacggGCg -3'
miRNA:   3'- -GCCUG---------------CGCAGu--------------AGAGCGGACCUca--CG- -5'
30238 3' -56.7 NC_006273.1 + 116637 0.67 0.927035
Target:  5'- uGGGCuGCGUCAcUUCGCCcagguuucUGGAGauUGUa -3'
miRNA:   3'- gCCUG-CGCAGUaGAGCGG--------ACCUC--ACG- -5'
30238 3' -56.7 NC_006273.1 + 55016 0.67 0.921831
Target:  5'- gGGGCGCGUCGUCgugaucccggUCGC--GGAGcaucgGCg -3'
miRNA:   3'- gCCUGCGCAGUAG----------AGCGgaCCUCa----CG- -5'
30238 3' -56.7 NC_006273.1 + 196001 0.67 0.921831
Target:  5'- uGGACGCGauccacgccUCGUcCUCGCCgGGuAGcGCc -3'
miRNA:   3'- gCCUGCGC---------AGUA-GAGCGGaCC-UCaCG- -5'
30238 3' -56.7 NC_006273.1 + 133191 0.68 0.904907
Target:  5'- aCGuGACGCGUUAUCgaCGCCgcGGucucaccgaGGUGCu -3'
miRNA:   3'- -GC-CUGCGCAGUAGa-GCGGa-CC---------UCACG- -5'
30238 3' -56.7 NC_006273.1 + 31767 0.68 0.892546
Target:  5'- gCGGACGaaaGUggggcCGUCUgcaCGCCccGGAGUGCc -3'
miRNA:   3'- -GCCUGCg--CA-----GUAGA---GCGGa-CCUCACG- -5'
30238 3' -56.7 NC_006273.1 + 192977 0.68 0.879346
Target:  5'- uGGGCGCG-CG-CUCGCCgucguUGGAGUu- -3'
miRNA:   3'- gCCUGCGCaGUaGAGCGG-----ACCUCAcg -5'
30238 3' -56.7 NC_006273.1 + 110115 0.68 0.879346
Target:  5'- cCGGACGCGcCAcgCUCGCuCUGacgccgcgcccGGUGCa -3'
miRNA:   3'- -GCCUGCGCaGUa-GAGCG-GACc----------UCACG- -5'
30238 3' -56.7 NC_006273.1 + 1364 0.69 0.865337
Target:  5'- aCGGACcuGCGUCAgcUgUCGCCgcgGGAcgcguggaucGUGCu -3'
miRNA:   3'- -GCCUG--CGCAGU--AgAGCGGa--CCU----------CACG- -5'
30238 3' -56.7 NC_006273.1 + 196257 0.69 0.865337
Target:  5'- aCGGACcuGCGUCAgcUgUCGCCgcgGGAcgcguggaucGUGCu -3'
miRNA:   3'- -GCCUG--CGCAGU--AgAGCGGa--CCU----------CACG- -5'
30238 3' -56.7 NC_006273.1 + 224290 0.69 0.864616
Target:  5'- uGGAucgcuauUGCGUCA--UUGUCUGGGGUGUa -3'
miRNA:   3'- gCCU-------GCGCAGUagAGCGGACCUCACG- -5'
30238 3' -56.7 NC_006273.1 + 29476 0.69 0.858041
Target:  5'- aGGGCGCGU--UCUCGCCcuuGAG-GCu -3'
miRNA:   3'- gCCUGCGCAguAGAGCGGac-CUCaCG- -5'
30238 3' -56.7 NC_006273.1 + 44657 0.69 0.842891
Target:  5'- uGGugGCGU--UCU-GCCUGGAgaagguGUGCg -3'
miRNA:   3'- gCCugCGCAguAGAgCGGACCU------CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.