miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 126616 0.66 0.993699
Target:  5'- uCGCucaaCGCCGCGcagAugGugGGGUu -3'
miRNA:   3'- uGCGuaa-GCGGCGCua-UugCugUCCA- -5'
30238 5' -53 NC_006273.1 + 208805 0.66 0.993699
Target:  5'- gUGCAUggGCCcagGCGAUggcggaggaGACGGCGGGa -3'
miRNA:   3'- uGCGUAagCGG---CGCUA---------UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 2032 0.66 0.993699
Target:  5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3'
miRNA:   3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 186056 0.66 0.993699
Target:  5'- -aGCG-UCGuCCGCGcgGGCGGCAGc- -3'
miRNA:   3'- ugCGUaAGC-GGCGCuaUUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 199417 0.66 0.993699
Target:  5'- aGCGCccgaaGCCGCGcgAGCGugcgaGCGGGg -3'
miRNA:   3'- -UGCGuaag-CGGCGCuaUUGC-----UGUCCa -5'
30238 5' -53 NC_006273.1 + 113228 0.66 0.993699
Target:  5'- -aGCAUUUGCCGggcuacgggaCGAUAACGG-AGGa -3'
miRNA:   3'- ugCGUAAGCGGC----------GCUAUUGCUgUCCa -5'
30238 5' -53 NC_006273.1 + 147539 0.66 0.993699
Target:  5'- gAUGgGggCGCgC-CGAUGACGACAGGc -3'
miRNA:   3'- -UGCgUaaGCG-GcGCUAUUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 196925 0.66 0.993699
Target:  5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3'
miRNA:   3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 201108 0.66 0.993339
Target:  5'- -gGCAUgaggggacccgggUGUCGCGAcaugucGACGACAGGUg -3'
miRNA:   3'- ugCGUAa------------GCGGCGCUa-----UUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 170150 0.66 0.992767
Target:  5'- gACGCcggugaggUCGauauCGCGGUcGCGAUAGGUg -3'
miRNA:   3'- -UGCGua------AGCg---GCGCUAuUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 46083 0.66 0.991729
Target:  5'- cCGCAggUGCCGCGGUGuACGucgcucuacAUAGGa -3'
miRNA:   3'- uGCGUaaGCGGCGCUAU-UGC---------UGUCCa -5'
30238 5' -53 NC_006273.1 + 2134 0.66 0.991729
Target:  5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3'
miRNA:   3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 197027 0.66 0.991729
Target:  5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3'
miRNA:   3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5'
30238 5' -53 NC_006273.1 + 205179 0.66 0.991395
Target:  5'- cACGC--UgGCCGCGGUGAgGACAagaagacggagcguGGUg -3'
miRNA:   3'- -UGCGuaAgCGGCGCUAUUgCUGU--------------CCA- -5'
30238 5' -53 NC_006273.1 + 202015 0.66 0.990576
Target:  5'- -gGCAcUCGCUGCGAcacgggGACGcgccGCAGGa -3'
miRNA:   3'- ugCGUaAGCGGCGCUa-----UUGC----UGUCCa -5'
30238 5' -53 NC_006273.1 + 42341 0.66 0.990576
Target:  5'- uGCGUAgcUCGCUGC--UGACGAgCAGGUc -3'
miRNA:   3'- -UGCGUa-AGCGGCGcuAUUGCU-GUCCA- -5'
30238 5' -53 NC_006273.1 + 219190 0.66 0.990576
Target:  5'- cACGCAUUUGCCuagcaCGAUAagGCGuuCGGGg -3'
miRNA:   3'- -UGCGUAAGCGGc----GCUAU--UGCu-GUCCa -5'
30238 5' -53 NC_006273.1 + 141166 0.66 0.9893
Target:  5'- cCGCGgacugCGCCGgGG-GGCGGCGGGc -3'
miRNA:   3'- uGCGUaa---GCGGCgCUaUUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 125005 0.66 0.987893
Target:  5'- uGCGCAgcagGCCGCGcagucguacGUAGCcGCGGGUg -3'
miRNA:   3'- -UGCGUaag-CGGCGC---------UAUUGcUGUCCA- -5'
30238 5' -53 NC_006273.1 + 60238 0.67 0.986348
Target:  5'- cACGCGUcCaCCGCGAcugggcACGGCGGGa -3'
miRNA:   3'- -UGCGUAaGcGGCGCUau----UGCUGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.