Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30238 | 5' | -53 | NC_006273.1 | + | 126616 | 0.66 | 0.993699 |
Target: 5'- uCGCucaaCGCCGCGcagAugGugGGGUu -3' miRNA: 3'- uGCGuaa-GCGGCGCua-UugCugUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 197027 | 0.66 | 0.991729 |
Target: 5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3' miRNA: 3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 201108 | 0.66 | 0.993339 |
Target: 5'- -gGCAUgaggggacccgggUGUCGCGAcaugucGACGACAGGUg -3' miRNA: 3'- ugCGUAa------------GCGGCGCUa-----UUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 113228 | 0.66 | 0.993699 |
Target: 5'- -aGCAUUUGCCGggcuacgggaCGAUAACGG-AGGa -3' miRNA: 3'- ugCGUAAGCGGC----------GCUAUUGCUgUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 2134 | 0.66 | 0.991729 |
Target: 5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3' miRNA: 3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 42341 | 0.66 | 0.990576 |
Target: 5'- uGCGUAgcUCGCUGC--UGACGAgCAGGUc -3' miRNA: 3'- -UGCGUa-AGCGGCGcuAUUGCU-GUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 170150 | 0.66 | 0.992767 |
Target: 5'- gACGCcggugaggUCGauauCGCGGUcGCGAUAGGUg -3' miRNA: 3'- -UGCGua------AGCg---GCGCUAuUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 186056 | 0.66 | 0.993699 |
Target: 5'- -aGCG-UCGuCCGCGcgGGCGGCAGc- -3' miRNA: 3'- ugCGUaAGC-GGCGCuaUUGCUGUCca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 125005 | 0.66 | 0.987893 |
Target: 5'- uGCGCAgcagGCCGCGcagucguacGUAGCcGCGGGUg -3' miRNA: 3'- -UGCGUaag-CGGCGC---------UAUUGcUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 46083 | 0.66 | 0.991729 |
Target: 5'- cCGCAggUGCCGCGGUGuACGucgcucuacAUAGGa -3' miRNA: 3'- uGCGUaaGCGGCGCUAU-UGC---------UGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 199417 | 0.66 | 0.993699 |
Target: 5'- aGCGCccgaaGCCGCGcgAGCGugcgaGCGGGg -3' miRNA: 3'- -UGCGuaag-CGGCGCuaUUGC-----UGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 202015 | 0.66 | 0.990576 |
Target: 5'- -gGCAcUCGCUGCGAcacgggGACGcgccGCAGGa -3' miRNA: 3'- ugCGUaAGCGGCGCUa-----UUGC----UGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 196925 | 0.66 | 0.993699 |
Target: 5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3' miRNA: 3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 147539 | 0.66 | 0.993699 |
Target: 5'- gAUGgGggCGCgC-CGAUGACGACAGGc -3' miRNA: 3'- -UGCgUaaGCG-GcGCUAUUGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 141166 | 0.66 | 0.9893 |
Target: 5'- cCGCGgacugCGCCGgGG-GGCGGCGGGc -3' miRNA: 3'- uGCGUaa---GCGGCgCUaUUGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 205179 | 0.66 | 0.991395 |
Target: 5'- cACGC--UgGCCGCGGUGAgGACAagaagacggagcguGGUg -3' miRNA: 3'- -UGCGuaAgCGGCGCUAUUgCUGU--------------CCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 2032 | 0.66 | 0.993699 |
Target: 5'- gGCGgGgacgCGCCGUGcgcGAUGGCAGGa -3' miRNA: 3'- -UGCgUaa--GCGGCGCua-UUGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 208805 | 0.66 | 0.993699 |
Target: 5'- gUGCAUggGCCcagGCGAUggcggaggaGACGGCGGGa -3' miRNA: 3'- uGCGUAagCGG---CGCUA---------UUGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 219190 | 0.66 | 0.990576 |
Target: 5'- cACGCAUUUGCCuagcaCGAUAagGCGuuCGGGg -3' miRNA: 3'- -UGCGUAAGCGGc----GCUAU--UGCu-GUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 82094 | 0.67 | 0.978616 |
Target: 5'- uCGCcgUUGCCGCGGcgguaguuGCGGCAGa- -3' miRNA: 3'- uGCGuaAGCGGCGCUau------UGCUGUCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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