Results 61 - 80 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30238 | 5' | -53 | NC_006273.1 | + | 102288 | 0.69 | 0.961549 |
Target: 5'- gACGCGUg-GCgGCGGUGACaggggcaacgcgGGCAGGUc -3' miRNA: 3'- -UGCGUAagCGgCGCUAUUG------------CUGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 176951 | 0.69 | 0.950187 |
Target: 5'- uCGgGUUUGCCGCGcu-GCGAguGGUu -3' miRNA: 3'- uGCgUAAGCGGCGCuauUGCUguCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 61145 | 0.69 | 0.957983 |
Target: 5'- aGCGUGUUguaaagguaGCCGCGcAUGACG-CAGGUg -3' miRNA: 3'- -UGCGUAAg--------CGGCGC-UAUUGCuGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 38080 | 0.69 | 0.957983 |
Target: 5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3' miRNA: 3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 161521 | 0.69 | 0.950187 |
Target: 5'- cCGCAUgUCgGCCGCGcucacgcgAACGGCGGGa -3' miRNA: 3'- uGCGUA-AG-CGGCGCua------UUGCUGUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 39120 | 0.69 | 0.94595 |
Target: 5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3' miRNA: 3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 78212 | 0.7 | 0.936782 |
Target: 5'- cGCGguUUCGCCGCcGGgaaaGACGGGc -3' miRNA: 3'- -UGCguAAGCGGCG-CUauugCUGUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 140405 | 0.7 | 0.926679 |
Target: 5'- cACGUGgaaGCCGUGcu-GCGACAGGUg -3' miRNA: 3'- -UGCGUaagCGGCGCuauUGCUGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 136628 | 0.7 | 0.931848 |
Target: 5'- aGCGCGUUUGuuGCGcg-GCGACgAGGa -3' miRNA: 3'- -UGCGUAAGCggCGCuauUGCUG-UCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 54884 | 0.7 | 0.915635 |
Target: 5'- aACGUGUUCGCgGCGAcGGCGAacuaacCAGGc -3' miRNA: 3'- -UGCGUAAGCGgCGCUaUUGCU------GUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 69436 | 0.7 | 0.921274 |
Target: 5'- -gGCAUggcggCGCCGCuGUAGCGGCGGa- -3' miRNA: 3'- ugCGUAa----GCGGCGcUAUUGCUGUCca -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 202304 | 0.7 | 0.915635 |
Target: 5'- gACGagg-CGCgGCGAUGACGAgCAGGc -3' miRNA: 3'- -UGCguaaGCGgCGCUAUUGCU-GUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 77028 | 0.71 | 0.883972 |
Target: 5'- uGCGCA--CGCCGCGcgAACGACGcucGGc -3' miRNA: 3'- -UGCGUaaGCGGCGCuaUUGCUGU---CCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 140671 | 0.71 | 0.883972 |
Target: 5'- uGCGCcaaCGCCgcagGCGAcGACGGCGGGUg -3' miRNA: 3'- -UGCGuaaGCGG----CGCUaUUGCUGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 213120 | 0.71 | 0.903656 |
Target: 5'- aGCGCGUg-GCUGCGAUGgaGCGGCAcgauGGUg -3' miRNA: 3'- -UGCGUAagCGGCGCUAU--UGCUGU----CCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 84045 | 0.71 | 0.897321 |
Target: 5'- gGCGCcaaaugaGCCGCGA-AGCGGCGGGc -3' miRNA: 3'- -UGCGuaag---CGGCGCUaUUGCUGUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 180506 | 0.71 | 0.909762 |
Target: 5'- uCGCcgUCGCCGCGAcacacguuCGACAuGGa -3' miRNA: 3'- uGCGuaAGCGGCGCUauu-----GCUGU-CCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 71798 | 0.71 | 0.909762 |
Target: 5'- -gGCAgcCGCgGCGGUGGCGACAacGGg -3' miRNA: 3'- ugCGUaaGCGgCGCUAUUGCUGU--CCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 172214 | 0.71 | 0.890759 |
Target: 5'- cGCGCcggccgCGCCGCGAgacgGACGcaagguaaACAGGUg -3' miRNA: 3'- -UGCGuaa---GCGGCGCUa---UUGC--------UGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 88860 | 0.72 | 0.854681 |
Target: 5'- cCGCuacuUUCGCggaCGCGGUAGCGGCAGuGUc -3' miRNA: 3'- uGCGu---AAGCG---GCGCUAUUGCUGUC-CA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home