Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30238 | 5' | -53 | NC_006273.1 | + | 140405 | 0.7 | 0.926679 |
Target: 5'- cACGUGgaaGCCGUGcu-GCGACAGGUg -3' miRNA: 3'- -UGCGUaagCGGCGCuauUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 39120 | 0.69 | 0.94595 |
Target: 5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3' miRNA: 3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 38080 | 0.69 | 0.957983 |
Target: 5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3' miRNA: 3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 161521 | 0.69 | 0.950187 |
Target: 5'- cCGCAUgUCgGCCGCGcucacgcgAACGGCGGGa -3' miRNA: 3'- uGCGUA-AG-CGGCGCua------UUGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 176951 | 0.69 | 0.950187 |
Target: 5'- uCGgGUUUGCCGCGcu-GCGAguGGUu -3' miRNA: 3'- uGCgUAAGCGGCGCuauUGCUguCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 125579 | 0.69 | 0.957983 |
Target: 5'- uGCGUGUccgugUCGCCGCGGaugcaguccuUGGCGcguaGCAGGUa -3' miRNA: 3'- -UGCGUA-----AGCGGCGCU----------AUUGC----UGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 120946 | 0.69 | 0.94595 |
Target: 5'- gGCGC---CGCCGcCGGUGACG-CGGGg -3' miRNA: 3'- -UGCGuaaGCGGC-GCUAUUGCuGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 234013 | 0.69 | 0.94595 |
Target: 5'- cACGCGUccCGCgGCGAcagcUGACG-CAGGUc -3' miRNA: 3'- -UGCGUAa-GCGgCGCU----AUUGCuGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 138755 | 0.69 | 0.950187 |
Target: 5'- cACGUAgUCGCgCGCGAaggugUGGCGGCAGcGg -3' miRNA: 3'- -UGCGUaAGCG-GCGCU-----AUUGCUGUC-Ca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 193110 | 0.69 | 0.950187 |
Target: 5'- aGCGCGggUCuCCgGCGGUAACGACGgcGGUg -3' miRNA: 3'- -UGCGUa-AGcGG-CGCUAUUGCUGU--CCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 41363 | 0.69 | 0.954197 |
Target: 5'- cGCGCGUUCG-CGCGGccaguUGGCGGGg -3' miRNA: 3'- -UGCGUAAGCgGCGCUauu--GCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 102288 | 0.69 | 0.961549 |
Target: 5'- gACGCGUg-GCgGCGGUGACaggggcaacgcgGGCAGGUc -3' miRNA: 3'- -UGCGUAagCGgCGCUAUUG------------CUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 61145 | 0.69 | 0.957983 |
Target: 5'- aGCGUGUUguaaagguaGCCGCGcAUGACG-CAGGUg -3' miRNA: 3'- -UGCGUAAg--------CGGCGC-UAUUGCuGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 232973 | 0.69 | 0.957983 |
Target: 5'- -aGCAgcCGCCGCGcgGccucgGCGGCGGGc -3' miRNA: 3'- ugCGUaaGCGGCGCuaU-----UGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 90364 | 0.68 | 0.973712 |
Target: 5'- gGCGCugggaUGCCGCGccGACGACuGGa -3' miRNA: 3'- -UGCGuaa--GCGGCGCuaUUGCUGuCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 63862 | 0.68 | 0.9649 |
Target: 5'- uGCGCgagcuGUUCGCCGCGAU--CGGCuguuGGc -3' miRNA: 3'- -UGCG-----UAAGCGGCGCUAuuGCUGu---CCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 37399 | 0.68 | 0.96804 |
Target: 5'- cACGCuca-GCCGCGAcugAGCGcCGGGg -3' miRNA: 3'- -UGCGuaagCGGCGCUa--UUGCuGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 101988 | 0.68 | 0.972093 |
Target: 5'- cACGCAgcaggCGCCGUGGggcugaaagaggagGACGugGGGc -3' miRNA: 3'- -UGCGUaa---GCGGCGCUa-------------UUGCugUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 223537 | 0.68 | 0.973712 |
Target: 5'- gGCGCAUggUGCCGCGcguggAGCGGCAcuuGGc -3' miRNA: 3'- -UGCGUAa-GCGGCGCua---UUGCUGU---CCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 162376 | 0.68 | 0.976257 |
Target: 5'- gGCGCuagUgGUgGCGGUGGCGGCGGcGg -3' miRNA: 3'- -UGCGua-AgCGgCGCUAUUGCUGUC-Ca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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