Results 81 - 87 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30238 | 5' | -53 | NC_006273.1 | + | 113228 | 0.66 | 0.993699 |
Target: 5'- -aGCAUUUGCCGggcuacgggaCGAUAACGG-AGGa -3' miRNA: 3'- ugCGUAAGCGGC----------GCUAUUGCUgUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 201108 | 0.66 | 0.993339 |
Target: 5'- -gGCAUgaggggacccgggUGUCGCGAcaugucGACGACAGGUg -3' miRNA: 3'- ugCGUAa------------GCGGCGCUa-----UUGCUGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 197027 | 0.66 | 0.991729 |
Target: 5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3' miRNA: 3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 219190 | 0.66 | 0.990576 |
Target: 5'- cACGCAUUUGCCuagcaCGAUAagGCGuuCGGGg -3' miRNA: 3'- -UGCGUAAGCGGc----GCUAU--UGCu-GUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 125005 | 0.66 | 0.987893 |
Target: 5'- uGCGCAgcagGCCGCGcagucguacGUAGCcGCGGGUg -3' miRNA: 3'- -UGCGUaag-CGGCGC---------UAUUGcUGUCCA- -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 147539 | 0.66 | 0.993699 |
Target: 5'- gAUGgGggCGCgC-CGAUGACGACAGGc -3' miRNA: 3'- -UGCgUaaGCG-GcGCUAUUGCUGUCCa -5' |
|||||||
30238 | 5' | -53 | NC_006273.1 | + | 199417 | 0.66 | 0.993699 |
Target: 5'- aGCGCccgaaGCCGCGcgAGCGugcgaGCGGGg -3' miRNA: 3'- -UGCGuaag-CGGCGCuaUUGC-----UGUCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home