miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30238 5' -53 NC_006273.1 + 222881 1.07 0.012286
Target:  5'- cACGCAUUCGCCGCGAUAACGACAGGUc -3'
miRNA:   3'- -UGCGUAAGCGGCGCUAUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 171279 0.76 0.670674
Target:  5'- cGCGCGUUgCaCCGCGGUAACGACGGc- -3'
miRNA:   3'- -UGCGUAA-GcGGCGCUAUUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 68748 0.74 0.787058
Target:  5'- gGCGCGUccaCGCCGCGGgu-CGACAuGGUc -3'
miRNA:   3'- -UGCGUAa--GCGGCGCUauuGCUGU-CCA- -5'
30238 5' -53 NC_006273.1 + 233567 0.74 0.787058
Target:  5'- uCGCGUUgGCgCGCcaacaguaaGGUGACGACAGGUu -3'
miRNA:   3'- uGCGUAAgCG-GCG---------CUAUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 112553 0.73 0.80495
Target:  5'- gACGCggUCGCCGCGucAGCGGCcgccGGUg -3'
miRNA:   3'- -UGCGuaAGCGGCGCuaUUGCUGu---CCA- -5'
30238 5' -53 NC_006273.1 + 1705 0.73 0.822227
Target:  5'- cGCGCGgaaaucCGCCGCGGcggUGGCGACuGGg -3'
miRNA:   3'- -UGCGUaa----GCGGCGCU---AUUGCUGuCCa -5'
30238 5' -53 NC_006273.1 + 88860 0.72 0.854681
Target:  5'- cCGCuacuUUCGCggaCGCGGUAGCGGCAGuGUc -3'
miRNA:   3'- uGCGu---AAGCG---GCGCUAUUGCUGUC-CA- -5'
30238 5' -53 NC_006273.1 + 15683 0.72 0.869746
Target:  5'- gACGCGUUCGUcgacgCGCGAgGGCGcagaGCGGGUg -3'
miRNA:   3'- -UGCGUAAGCG-----GCGCUaUUGC----UGUCCA- -5'
30238 5' -53 NC_006273.1 + 140671 0.71 0.883972
Target:  5'- uGCGCcaaCGCCgcagGCGAcGACGGCGGGUg -3'
miRNA:   3'- -UGCGuaaGCGG----CGCUaUUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 77028 0.71 0.883972
Target:  5'- uGCGCA--CGCCGCGcgAACGACGcucGGc -3'
miRNA:   3'- -UGCGUaaGCGGCGCuaUUGCUGU---CCa -5'
30238 5' -53 NC_006273.1 + 172214 0.71 0.890759
Target:  5'- cGCGCcggccgCGCCGCGAgacgGACGcaagguaaACAGGUg -3'
miRNA:   3'- -UGCGuaa---GCGGCGCUa---UUGC--------UGUCCA- -5'
30238 5' -53 NC_006273.1 + 84045 0.71 0.897321
Target:  5'- gGCGCcaaaugaGCCGCGA-AGCGGCGGGc -3'
miRNA:   3'- -UGCGuaag---CGGCGCUaUUGCUGUCCa -5'
30238 5' -53 NC_006273.1 + 213120 0.71 0.903656
Target:  5'- aGCGCGUg-GCUGCGAUGgaGCGGCAcgauGGUg -3'
miRNA:   3'- -UGCGUAagCGGCGCUAU--UGCUGU----CCA- -5'
30238 5' -53 NC_006273.1 + 71798 0.71 0.909762
Target:  5'- -gGCAgcCGCgGCGGUGGCGACAacGGg -3'
miRNA:   3'- ugCGUaaGCGgCGCUAUUGCUGU--CCa -5'
30238 5' -53 NC_006273.1 + 180506 0.71 0.909762
Target:  5'- uCGCcgUCGCCGCGAcacacguuCGACAuGGa -3'
miRNA:   3'- uGCGuaAGCGGCGCUauu-----GCUGU-CCa -5'
30238 5' -53 NC_006273.1 + 54884 0.7 0.915635
Target:  5'- aACGUGUUCGCgGCGAcGGCGAacuaacCAGGc -3'
miRNA:   3'- -UGCGUAAGCGgCGCUaUUGCU------GUCCa -5'
30238 5' -53 NC_006273.1 + 202304 0.7 0.915635
Target:  5'- gACGagg-CGCgGCGAUGACGAgCAGGc -3'
miRNA:   3'- -UGCguaaGCGgCGCUAUUGCU-GUCCa -5'
30238 5' -53 NC_006273.1 + 69436 0.7 0.921274
Target:  5'- -gGCAUggcggCGCCGCuGUAGCGGCGGa- -3'
miRNA:   3'- ugCGUAa----GCGGCGcUAUUGCUGUCca -5'
30238 5' -53 NC_006273.1 + 140405 0.7 0.926679
Target:  5'- cACGUGgaaGCCGUGcu-GCGACAGGUg -3'
miRNA:   3'- -UGCGUaagCGGCGCuauUGCUGUCCA- -5'
30238 5' -53 NC_006273.1 + 136628 0.7 0.931848
Target:  5'- aGCGCGUUUGuuGCGcg-GCGACgAGGa -3'
miRNA:   3'- -UGCGUAAGCggCGCuauUGCUG-UCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.