Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30238 | 5' | -53 | NC_006273.1 | + | 175774 | 0.67 | 0.984655 |
Target: 5'- uGCGCA-UCGCCGUGGcguUGACGGCc--- -3' miRNA: 3'- -UGCGUaAGCGGCGCU---AUUGCUGucca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 157375 | 0.67 | 0.984655 |
Target: 5'- cUGCG-UCGCCuGCGA---CGGCGGGUg -3' miRNA: 3'- uGCGUaAGCGG-CGCUauuGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 84130 | 0.67 | 0.984655 |
Target: 5'- cGCGCcg-CGCCGCuuGAUcACGGCAGa- -3' miRNA: 3'- -UGCGuaaGCGGCG--CUAuUGCUGUCca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 60238 | 0.67 | 0.986348 |
Target: 5'- cACGCGUcCaCCGCGAcugggcACGGCGGGa -3' miRNA: 3'- -UGCGUAaGcGGCGCUau----UGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 195757 | 0.67 | 0.986348 |
Target: 5'- aGCGCG-UCGCCGCuaaaaaagAGUGACGGGUu -3' miRNA: 3'- -UGCGUaAGCGGCGcua-----UUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 108095 | 0.67 | 0.986348 |
Target: 5'- uACGCAccUGCCGCGuaacauggaaGGCGuACAGGUa -3' miRNA: 3'- -UGCGUaaGCGGCGCua--------UUGC-UGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 136119 | 0.67 | 0.986348 |
Target: 5'- cGCGCuUUUGaCCGCGA--GCGGCGGa- -3' miRNA: 3'- -UGCGuAAGC-GGCGCUauUGCUGUCca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 21466 | 0.67 | 0.986348 |
Target: 5'- gUGCGUUCGCUgGUGGUGgacgcacgcaGCGGuCAGGUg -3' miRNA: 3'- uGCGUAAGCGG-CGCUAU----------UGCU-GUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 125005 | 0.66 | 0.987893 |
Target: 5'- uGCGCAgcagGCCGCGcagucguacGUAGCcGCGGGUg -3' miRNA: 3'- -UGCGUaag-CGGCGC---------UAUUGcUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 141166 | 0.66 | 0.9893 |
Target: 5'- cCGCGgacugCGCCGgGG-GGCGGCGGGc -3' miRNA: 3'- uGCGUaa---GCGGCgCUaUUGCUGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 219190 | 0.66 | 0.990576 |
Target: 5'- cACGCAUUUGCCuagcaCGAUAagGCGuuCGGGg -3' miRNA: 3'- -UGCGUAAGCGGc----GCUAU--UGCu-GUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 202015 | 0.66 | 0.990576 |
Target: 5'- -gGCAcUCGCUGCGAcacgggGACGcgccGCAGGa -3' miRNA: 3'- ugCGUaAGCGGCGCUa-----UUGC----UGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 42341 | 0.66 | 0.990576 |
Target: 5'- uGCGUAgcUCGCUGC--UGACGAgCAGGUc -3' miRNA: 3'- -UGCGUa-AGCGGCGcuAUUGCU-GUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 205179 | 0.66 | 0.991395 |
Target: 5'- cACGC--UgGCCGCGGUGAgGACAagaagacggagcguGGUg -3' miRNA: 3'- -UGCGuaAgCGGCGCUAUUgCUGU--------------CCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 2134 | 0.66 | 0.991729 |
Target: 5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3' miRNA: 3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 197027 | 0.66 | 0.991729 |
Target: 5'- aACGCGgacgCGCaCGCGGUGgucggggcggacGCGACGGcGg -3' miRNA: 3'- -UGCGUaa--GCG-GCGCUAU------------UGCUGUC-Ca -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 46083 | 0.66 | 0.991729 |
Target: 5'- cCGCAggUGCCGCGGUGuACGucgcucuacAUAGGa -3' miRNA: 3'- uGCGUaaGCGGCGCUAU-UGC---------UGUCCa -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 170150 | 0.66 | 0.992767 |
Target: 5'- gACGCcggugaggUCGauauCGCGGUcGCGAUAGGUg -3' miRNA: 3'- -UGCGua------AGCg---GCGCUAuUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 201108 | 0.66 | 0.993339 |
Target: 5'- -gGCAUgaggggacccgggUGUCGCGAcaugucGACGACAGGUg -3' miRNA: 3'- ugCGUAa------------GCGGCGCUa-----UUGCUGUCCA- -5' |
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30238 | 5' | -53 | NC_006273.1 | + | 199417 | 0.66 | 0.993699 |
Target: 5'- aGCGCccgaaGCCGCGcgAGCGugcgaGCGGGg -3' miRNA: 3'- -UGCGuaag-CGGCGCuaUUGC-----UGUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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